Gene detail

Detailed information of FUN_053977-T1 in Siderastrea siderea

Genomic Location: contig_92:806282...913309
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_053977-T1

ATGGAAAAAGAACAAGCTTACAAAGACGCGGCCAAAAATTACGAGAATGCCTGGATTTACGGCAACCAAAGCAATCCCACAATTGGTTACAGACTGGCGTTCAACTATCTCAAGGCAAAGCGCCTTGTAGACGCTATTGACGTTTGTCACAAGgTTTTAAGCCAGCATCCAAACTACCCCAAGATCAGGAAAGAAATCTTGGATAAAGCACGATTGTGGGGAaatccttttttctttcaactAAAGCCTGAAACAGGAAAAACATCCCCGAGAAATAACGCCGAATTGTCTCTCCAGGTTCGAGTCTTTGTATCTATGAGTTATGAAGACGACTCCTCTACTGTTCATTCGCCTTCAGCTTGGTGGGCTACAAATATAGACACAGCGGGATTTGAGCTGTGTTCACGTACAGCGGGATCGACAAATCGAACAGTGATAAATTGGCTAGCGTTCCAAGACAAACCAGAGATCACACATGGAAGCGTTACTTTCAGTGGAATATGGACAACGGAAACCAAGTGTGAAAAAGTGGCCTTTTCTCAGAGCTTTGCTGGAAAACCTTCTGTGTTTATCACTTCTAAATACACTCGTAGCACAAAATCTGATGATGCCATGTACGCTTGGTTGGAAAATATCAGTTCTAAAGAATTTGAGCTTTGCATCAGGGAGTTCTTACCATTTGATGGAAAACATCAAGATACAACAGTGGACTGGTTTGCATTCACTGGCAATGGCTCTGATCTCAATTTTACAATTACTGGAGAAGCAGTCTTCCCCAATACTGGCACACCCTCTGCTGAAGACAACTACGGCTTCTGTCAGCAAGTGCCTTTTAATACCACCTTCTATGCATCACCAGTCGTCCTTGTTTCTGTACACCACCAATATGACAGACAAGCGAAGAGCTTTGTTCCTCCAGAAAACAACATAATCACGGCCTGGGTGGAGgaagtaggCTTAAGGGATATGAAGATCTGTGTAAAGGATTTAATCGGATCAGGGAGCGGTCACGACCCCTTGTCAGTCAGCTATGCTGTTATTGGAGGGTTTCCAATTGTTCGAGGCCGAGTAGAACTCCTTCATGTTCCCAAATGGTCTGATTCAAGCTGCAAGACAGTGGCTTTCCCGCCATACCGCTTCTATCCCGATAAACGGGTGCATGTCCAAATCACTGTCAGTCACATCAGACTGAATGACTCCGTGACAGTCCACGACGCTGTCACTTCATGGACGGAAAGAATGAACCCAAAAAACTTTACTGTCTGTGCCATGCAATCTGGAAGAAAAGAAGAGAATTTCAATCCGTTTGCGACCATTGATTGGGTTGCATATCAGGGAGCACCGTCGGAAGGATTGACGGGAACGATTCAACTGCAAAAATGGTGGTCTGGGACGAATTGCGCAGATGTAACTTTTCCCAAGGACAAGTTCGCTGAGGCGCCTGTAGTTCTTTTGACGTCAGAACATCTGAGGACTGGTAAGGAGTATGACGCTGCGCTTATCTGGACAGAGGATGTAACAAAGGATTCATTTAAAGCCTGTCTTCGTGAAATGCAAAACTTCGACGGCAAGCATGAAGATATTGACGTGAATTGGTTTGCGTTCGCCAAGCTACACAAACCACTCTTTAGCGAGCATGGCACGATCAATTTTCCAAACACAAACCCACCAACAGATGAAGACAACAACGCTTACTGCCAGGCAAGAAATgaagttcttttttttaaatttgttttctttgcaagAAACTACACCGCAACACCAACAGTACTACTTACAGCCAACCACAGCACAACGGCAAGTGGGAACTCGGCACCAGTTCACAACGGGATTACCACATGGATCGAGAACATGAATACCTCTGGATTCAGAGCCTGTGTTAAGGAGCTTTACGAGACCAGATATGATCCGTTATCAGTGAGTTACGCGGTCCTTACAGATATCTGTGATCCTGGATGGAGCTATTTCAAAGGTTTCTGTTACTATACTAGCAAAACATGCACCAACTGGACCACAGCACTGAAAAAATGCCGCCAAGAAAACTCAGTTCTTGTTGACGTCAACAACAATGAAGAAAACGTCTATCTACAACATCGCCACAATGGTGAAAAATCCTGGCTGGGATTAAATGACATCTCCACAGAGGGAGACTTCATTTGGGCGGACCGCGGAGCTGGGAACTTTACAGCTTGGGCCAAAAACCAACCGAACAATTTTGGAGAAGAAGACTGTGTACACGCGCTTGGTGTGGAACACAACTACAAATGGAATGACGTGAAATGCAATGACTGTCATCAGTATACTTGTAAGAAAGATTTGAACGAATGTGCAAGACAGACAAACTACTGCCACGAGTTCGCCTCTTGTACAAACACACGTGGTTCTTATTCCTGCACATGCAACAAAAACTATCTTGGAGACGGCTTTGAATGCTATAATTATGCAGGTGAGATCTGTAGTGTGTTCGTTAATTAa

Transcript

FUN_053977-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan
PF09458 all species →	H_lectin	H-type lectin domain	Domain	Interproscan
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR040364 all species →	Family	Tetratricopeptide repeat protein 21A/21B	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR019019 all species →	Domain	H-type lectin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14699 all species →	STI2 PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030991 all species →	Cellular Component	intraciliary transport particle A	Interproscan
GO:0035721 all species →	Biological Process	intraciliary retrograde transport	Interproscan
GO:0061512 all species →	Biological Process	protein localization to cilium	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_053977-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.