Detailed information of FUN_054006-T1 in Siderastrea siderea

Genomic Location: contig_92:1646455...1680206
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_054006-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR042505
all species →		FamilyCytoplasmic dynein 2 intermediate chain 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16022
all species →		WD REPEAT DOMAIN 60Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005868
all species →		Cellular Componentcytoplasmic dynein complexInterproscan
GO:0042073
all species →		Biological Processintraciliary transportInterproscan
GO:0045503
all species →		Molecular Functiondynein light chain bindingInterproscan
GO:0045504
all species →		Molecular Functiondynein heavy chain bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22869WDR60; WD repeat-containing protein 60-Cilium and associated proteinsko03037deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_054006-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
49TPM > 0
7Conditions
188.5Max TPM
37.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 12 33.47 142.05
holobiont · low.pH Control.temp 20 6 16.56 110.04
holobiont · control.pH_high.temp 20 12 50.95 188.46
holobiont · control.pH Control.temp 19 13 41.55 131.92
Whole organism 4 4 72.21 81.34
unannotated 1 1 25.76 25.76
live coral tissue/skeleton 1 1 22.99 22.99

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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