Gene detail

Detailed information of FUN_054210-T1 in Siderastrea siderea

Genomic Location: contig_93:1931339...1941265
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_054210-T1

ATGCCGATTCAGACACCACAGTGGACGGAGTTCCTCCAGTGTCCAATATGTACCAAGGATTTTGACGAACACAACAGGCAACCAATCAGTCTTGGATGTGGCCATACAATGTGTGTTTCCTGCTTATTATCACTGCCAAGAACGCAATGTCCATTTGACCAGGCCACAGTTGAAACTAACATCTCAAAGCTTCCGTACAACTATGCTTTGCTGCAGCTAGTTGGAGTAGAAGTACCAGACGACCCACTTCCTGACATAGAAAGCATACAGAACAATGCAAGTGAATATCGAGCAGCCAAGCGCTTTATTGAAGAACTTGCACTGTTCTTACAACCTGTTGCTGGCAGCACTAACGGAATGGTCAATGGAACTAGCAATGGAAGTGGATGTAATGGCTCTTTGAACGTGAACGGAAATAATATACTTACAAGACCTATGCAGCGTAAACTTGTGACATTAGTAAACTGTCAGCTGGCTGAAACTGATGGACGAACCAGGGCAATGCGTGCTGCAAGAAGCCTTGGGGAAAGAACCGTCACTGAGCTGATTTTATTACATCAAAATCAGCAGCAGCTGTCAACAAATTTGTGGGCTGCTGTTCGCAATCGTGGTTGTCAGTTTTTAGGACCAGCAATGCAGGAAGAAGCATTGAAACTGATTTTGTTGGCTCTTGAGGGAGGAGAAGCTCTGTCTAGGAAAGTTTTAGTTCTGTTTGTGGTTCAAAAGCTGGAGTCAATGTTTCCACAAGCTTCAAAAACAAGTATTGGCCATGTAGTGCAGTTACTTTACAGGGCATCCTGTTTTAAGgTGGAAAAGAAGAACAATGAATCATCTTTGATGCAGCTTAAAGAACAGTTCCGCACATATGATGCACTGCGCAAGGAGCATGATGCACAGATAGTACAGATTGCAACAGAGGCAGGACTACGCATTCTCCCCGACCAGTGGTCCTCACTCCTGTACGGTGACCTTGAGCACAAGTCACACATGCAATCCATTATTGACAAGCTCCAGTCTCCAGCATCATTTTCTCAGAGTATTCAGGAGTTGGTTATTGCACTTCAGAGGTCCGGTGACCCTGGCAATCTCTGCCAGATGCGTGACCAGTTTGAATTGCTTTCTCAGATTGACGCCTCACCAGAGGCAGAATGTCCGAAGTGGAGTGAACTAGAGAAAGCTATGAGTGCAGTGCATTCCGTAGTTCATGGACTTGTGAAGTTTTCAAAAGTGTATGGTAAGGGTATGCGCGGCTCCAGTGAGCCACCCCAGCCTCATAACAACACCAAATTCAAAACCAGTATGTGTAGGGATCATGCACGAGGGGGATGTCCCAGGGGAGTTAACTGCACCTTTGCGCACTCTGAGGAGGAGCTGGAGAGGTATAGCAAAAGAAGAACACGTATGCCCCGCCCCACAGCCATTCCGAGAGGATCAGGACCTGGTGCTGGCCCAGATCAATACTCACCCCATGGCTCCATAGAGAATGGCTGTGACTCAAGTCCCACTTCTACCCAGGTTCCAAATGGCTCAGCGAGATCTTCCCCTCAGTATGCTTCAGGTGATATGTCACAACCTTCACCTGCTTATGGAGCTGCGACTCAGCTAAGCCGCAGAGACAGCCAGGAACAAATTCAGATGATGACACAGAGAATGAAGCAAATGACAATGCAATCTGGACAGCCCATGTATCAGAGTGACGGCTATGTCGGACCGCGCTCGCCATATGATCATCTGCAGTCATCATATGTGCCATCTTCAGGAAGTGAGAGAGCAGCTTATTTCCAGTATTATCCCCAGTCTGCTGGCAACTCTTACTCCAATGTCGTCTCCAGGGGGAAGGATGTGACAGCTGGTGTTATGACTCCACCTCGTAACTCTCCCTTGACTGTTCAGGATGAAGGGATGAATGGAATAAATGGGATGAATGGAATTAGTGGAATGAACGGGATGACAAATGGACATGTGGACCATCACCCCTCCCTATACAATGGCAGGGCTGCACGGCCAAGAAGAGACATGGCCCCCGTGCATCAGTCTCAGCCTCTTGGAGCTGGCAGCTATCAGCCGTTTGATCATTCGTATGGCTATCCATCAGATCCTACTGGGTACTACAGtcCCCAGACAGATTTTTATACATCAGCATATGCTGGGAGAGCGGCAATGTCGTATGAACCCATACACCAGAGTGTGGTTGGGTATCCTTACCCTGGGGCACGTGATTATTATCCAGTTGCTCGGCCGCCTTTTTATGTTTCTGCTGATCCAGTTGGAAGAGCAGGGATGAGAGGAAGAAGTCCATTCATTCCTGGTGATCTAATCGATGAAAAGAATGCCGAGTCATCATCTCCTCGAAGCAGTGACGGCGATTTTCTGGACTTGTTTATTCCCAGCAGGAAAGACACCACACTGTCCAGTGCCAGCAGTGGTGTCAGCAGTGGCTCCCCACTCAGTCACTCTCCTGCCGCCAGCCAGTCATCAAACTCCAGTTTGTCGCCTAGGCAACAATCTCCTGTGGGTTGGCATGGAAGTGACTCTGAGTACATCTGGAGAAATTTTACTGATGACAGCACTACTTTGCCACCTCCTCCGGGTATCACTGATACTGCACCAATATGGGGACCGCACCACGGGAATGAGGTTCGCAAGCTTTGGCCACCACTTATTGACTTTGATGACTGGTCTAGGAAAGAAGAACAGATCAAGAAAGATGAGCAGTTGGCTCGGGCCCTACAGGAACAGTTGGAGCGCGATACTCCTCCGGAAACAAGGTGCAATGAGTTGACTTCACAAACGCTTGTCAGTGGAGACCAGCAAGGCAATGAGCAGATCAGGAGGGGGCAGGACGCACCCGATCGCACCCTGACCATTGACAGCCTCGAGAGTGAAGCTGAGGTAAAGCGCAGAAAAAGAGAAGAACACATGCGCTTGCTTCAGGAACGCAGAGCCCTTCTTCAACAGCAGGACAGAGAAAAGCAGGAACGAGAAGaccgtaaactcgccgaggaaCTTGCCTTCCGGGACGCACAGAAGGATGGATTAGTTCCGGATCGCAGGTGCATTATGAAGCCTTTCCCTAGTGTCATCTCCCGCGGGGCCCCCATGGGGTTCGGTTTCAGCAGCAAGGGGGAAAGTGAGATCCCTGGGGAGCTGGATGCGTTCAGCGGGCTAAGCAGCTTCCGTGGCTCCTGTGCATCCTCATTGGCTAACAATGATGAGGAGTTTGATTCGTCAAAGATGACGTCAGGTTGCAGTGGAGACATCCGCGTACAGGAGTGA

Transcript

FUN_054210-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14634 all species →	zf-RING_5	zinc-RING finger domain	Domain	Interproscan
PF18386 all species →	ROQ_II	Roquin II domain	Domain	Interproscan
PF00642 all species →	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan
PF21206 all species →	Roquin_1_2-like_ROQ	Roquin 1/2-like, ROQ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR041523 all species →	Domain	Roquin II	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR052249 all species →	Family	Roquin domain-containing protein	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR048575 all species →	Domain	Roquin 1/2-like, ROQ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13139 all species →	RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0000288 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0010494 all species →	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0035613 all species →	Molecular Function	RNA stem-loop binding	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15690	RC3H; RING finger and CCCH-type zinc finger domain-containing protein	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.