Detailed information of FUN_055277-T2 in Siderastrea siderea

Genomic Location: contig_100:1640057...1669595
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00856
all species →		SETSET domainFamilyInterproscan
PF00397
all species →		WWWW domainDomainInterproscan
PF17907
all species →		AWSAWS domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001202
all species →		DomainWW domainInterproscan
IPR006560
all species →		DomainAWS domainInterproscan
IPR003616
all species →		DomainPost-SET domainInterproscan
IPR001214
all species →		DomainSET domainInterproscan
IPR042294
all species →		FamilyHistone-lysine N-methyltransferase SETD2, animalInterproscan
IPR035441
all species →		Homologous_superfamilyTFIIS/LEDGF domain superfamilyInterproscan
IPR046341
all species →		Homologous_superfamilySET domain superfamilyInterproscan
IPR036020
all species →		Homologous_superfamilyWW domain superfamilyInterproscan
IPR044437
all species →		DomainSETD2/Set2, SET domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46711
all species →		HISTONE-LYSINE N-METHYLTRANSFERASE SETD2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0042054
all species →		Molecular Functionhistone methyltransferase activityInterproscan
GO:0005694
all species →		Cellular ComponentchromosomeInterproscan
GO:0010468
all species →		Biological Processregulation of gene expressionInterproscan
GO:0016279
all species →		Molecular Functionprotein-lysine N-methyltransferase activityInterproscan
GO:0046975
all species →		Molecular Functionhistone H3K36 methyltransferase activityInterproscan
GO:0097198
all species →		Biological Processobsolete histone H3-K36 trimethylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_055277-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_055277-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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