Detailed information of FUN_055494-T1 in Siderastrea siderea

Genomic Location: contig_102:356483...372609
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00169
all species →		PHPH domainDomainInterproscan
PF08174
all species →		AnillinCell division protein anillinDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051364
all species →		FamilyCytokinesis and Rho signaling-related proteinInterproscan
IPR001849
all species →		DomainPleckstrin homology domainInterproscan
IPR012966
all species →		DomainAnillin homology domainInterproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR037840
all species →		DomainAnillin, PH domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21538
all species →		ANILLIN/RHOTEKIN RTKNInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000281
all species →		Biological Processmitotic cytokinesisInterproscan
GO:0000915
all species →		Biological Processactomyosin contractile ring assemblyInterproscan
GO:0005826
all species →		Cellular Componentactomyosin contractile ringInterproscan
GO:0031106
all species →		Biological Processseptin ring organizationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_055494-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_055494-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
80TPM > 0
7Conditions
460.2Max TPM
120.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 20 137.25 460.20
holobiont · low.pH Control.temp 20 18 142.45 334.36
holobiont · control.pH_high.temp 20 18 118.77 368.12
holobiont · control.pH Control.temp 19 18 113.85 266.04
Whole organism 4 4 13.18 15.00
unannotated 1 1 9.73 9.73
live coral tissue/skeleton 1 1 12.32 12.32

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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