Gene detail

Detailed information of FUN_055535-T2 in Siderastrea siderea

Genomic Location: contig_102:761749...776052
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_055535-T2

AAGATATTGTGCAAGTTGCAGCGAAGGAGCAAGGATGCAGGGATGAAGGTTCCTTGTGTTTATTTTTCTACCattttccttcagtttttaaCGTTAGAATCTACATCACATGGAGACACAGACGATCCTTTCCCAGGAGATATCCTTACACCTTACGAGGATCATTACAGAACTAAGAGAAATCACCGTTTTGTCCGGGACTGCCAGCCGGTTCGATTCGGTAACACAACTCATGAAACTTACAGCACTTCTGTGGGTTTAAACCCCGGACAACCTTTTGTCCAAGTGCACAATTTTTTTCACGAATTTACTAGAGATGGTAAAACAATTAATGCTGTTGGACACGTTGTGACGTTAGAAGATCCTTTCAGAACGTTTTCTGTCCTAGAACCGAAAGAAATTGGAGGTTGTAGTAAGTATACAAGAGCGACTGTTGATGTATCTGCTAAACAGCGAAAGTGCTACGTCTCTACAAATGGTGGAATGTTTAAAACTAAAGATGGGATGTGTTATGGAAATATTTTCAGTGACGGCAGGAAAGTCCAAGATTCTGGCGGTGTTCAAAATGCTAATTTCGGGATTCGTCGAGATGGTACACTTGTCGTAGGGTACTTATCCGAGGAGGATGTTTTGCAACAAGAAAACCCATTTGTTCAGCTGGTTTCTGGTGTTGTATGGTTGTTAAGAAATGGTTCTAGTTACGTGACTGAGAGTAAGAAAGCAGAATGCCGTGACACCGAGGAAACAGGACCTATGGACGTGTTTGCAAGTGTCATATCTGCGAGAACTGCGCTAGGTCACGATGAGAAAGGGCGAGTTATGATGGTCCAGGTAGATGGGAAAACGGATCACAGAGGgattGATCTGTACAGTTTTGCTGACCTCCTGTTAAAGCTTGGCCTTGTAAATGCTATAAACCTTGATGGAGGAGGCTCAGCAACAATGGTGGTGAATGGCACTGTTGTCAATTATCCTTCTGATAAATGTGGTGAATTCACATGCCCAAGAGAAGTGTCCACAATTGTCTGTGCACATGAACCTGACTGTGTGTCCAGGAATTGCAGTGGTCATGGACAGTGTGTGATGGGACAGTGTTTCTGTGACAGTCAGTGGACTGGCGAATCTTGTGATGttttaaaatgtaaacaaaacaacTGTTCTTCAAATGGAGTATGCTCTGATCAAGATGGTTGTTTATGTTTTCCTGGTTGGACTGGAGAGAACTGCAGTGAAGCTTGTCCTTCTGGTTTCTTTGGAGTAAACTGTAGTAGAGAGTGTCTCTGTCTTAACGGTGGCACATGCAACTTAATGAATGGACAGTGCAGTTGTACCACAGGCTGGACAGGAACATTCTGTCAACAGCGTAAGTACTGTTGAGCATTAATTTACCTCACTCTCAAAAATTATGGCGAGGAGCACTGGTCTAGGGCTTAGAGTGCAGGTTATTAATCACAGGGTTGATCATTCAAGCCTGTTGTCTGACGTTGTGTTGCTCCTTTGACAAGAAACCTTTTGCTTCACATTTTCTCTCTGCACCCAGGTATATAAATGGGTTCCAGGAAACTGTTAGGGCCAATTTACACCGTACgattttttcttacaactgttgtaTGTGACTTGCTTATGTCATGTCTGCAACACGAATGATGTCGTCTCAATATCacaacagttgcacacaacacaaaaaatgtcATATGAttctgaaacatgttttaaaaccctacgatagtcatagccacaatcaaaatgttacaaTGATGAGTTGTTTACAATCTTTGCCTGACGCAAGCAGCGCgtgctacaaaagtcgcatactacagttgtaaggaaaaatcgtaccgtctaaaccTGCCATTAGCTAAATCTAAGAAAATGCtgagggtaaccctgcaataGTCTGGCATCCCACCTGGGTGGAGTAGTAATACTGTTAGTCATTCTGACTGTTAGTTGTCTCATCCTGCAGACTCAAAAGAGCCAGCCAAGTGGTCCACTTGCAGTCTTGTGCAACCTTGCCTTTATCCACCTCCCCCTACCTGAACTGGTAGGGGTAAATCTAACAAAATGCTAAGTGtaaccctttaaccctttaccgtcagcgtttttcccttagaaaaacgcattttttaccgctaaagcggtttttgaagtgctatggtgccaaatgccactaaactttgctacaaaagcgttttcttgcattttagctcaattttgagccagcttctgttgaaaattgtacattattttggtttcaggcatgcgcataagccaaaatttggacttgtttttttttgtgtgtgtttttttttttttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09992 all species →	NAGPA	Phosphodiester glycosidase	Domain	Interproscan
PF07974 all species →	EGF_2	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018711 all species →	Domain	Phosphodiester glycosidase	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR001774 all species →	Domain	Delta/Serrate/lag-2 (DSL) protein	Interproscan
IPR013111 all species →	Domain	EGF-like domain, extracellular	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR40446 all species →	N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007154 all species →	Biological Process	cell communication	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0033299 all species →	Biological Process	secretion of lysosomal enzymes	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01125	NAGPA; N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	EC:3.1.4.45	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.