Detailed information of FUN_055662-T1 in Siderastrea siderea

Genomic Location: contig_103:323525...341291
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004467 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15280
all species →		BORA_NProtein aurora borealis N-terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023252
all species →		FamilyAurora borealis proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14728
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0007088
all species →		Biological Processregulation of mitotic nuclear divisionInterproscan
GO:0019901
all species →		Molecular Functionprotein kinase bindingInterproscan
GO:0032147
all species →		Biological Processactivation of protein kinase activityInterproscan
GO:0060236
all species →		Biological Processregulation of mitotic spindle organizationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_055662-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_055662-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
67TPM > 0
7Conditions
1,719.8Max TPM
117.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 16 97.65 272.25
holobiont · low.pH Control.temp 20 15 159.52 647.78
holobiont · control.pH_high.temp 20 14 85.00 466.29
holobiont · control.pH Control.temp 19 16 163.50 1,719.82
Whole organism 4 4 5.13 6.51
unannotated 1 1 4.19 4.19
live coral tissue/skeleton 1 1 7.38 7.38

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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