Detailed information of FUN_055960-T2 in Siderastrea siderea

Genomic Location: contig_105:1147386...1162689
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01410
all species →		COLFIFibrillar collagen C-terminal domainFamilyInterproscan
PF00059
all species →		Lectin_CLectin C-type domainDomainInterproscan
PF07648
all species →		Kazal_2Kazal-type serine protease inhibitor domainDomainInterproscan
PF12947
all species →		EGF_3EGF domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR016187
all species →		Homologous_superfamilyC-type lectin foldInterproscan
IPR002350
all species →		DomainKazal domainInterproscan
IPR036056
all species →		Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR036058
all species →		Homologous_superfamilyKazal domain superfamilyInterproscan
IPR000885
all species →		DomainFibrillar collagen, C-terminalInterproscan
IPR018097
all species →		Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR001304
all species →		DomainC-type lectin-likeInterproscan
IPR002181
all species →		DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR000152
all species →		PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR018378
all species →		Conserved_siteC-type lectin, conserved siteInterproscan
IPR037221
all species →		Homologous_superfamilyH-type lectin domain superfamilyInterproscan
IPR016186
all species →		Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR051004
all species →		FamilyDendritic cell-specific ICAM-grabbing non-integrin domain-containing proteinInterproscan
IPR001881
all species →		DomainEGF-like calcium-binding domainInterproscan
IPR024731
all species →		DomainEGF domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22802
all species →		C-TYPE LECTIN SUPERFAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005201
all species →		Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0009897
all species →		Cellular Componentexternal side of plasma membraneInterproscan
GO:0030246
all species →		Molecular Functioncarbohydrate bindingInterproscan
GO:0044419
all species →		Biological Processbiological process involved in interspecies interaction between organismsInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_055960-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_055960-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP