Detailed information of FUN_055978-T1 in Siderastrea siderea

Genomic Location: contig_105:1303006...1329464
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10174
all species →		CastRIM-binding protein of the cytomatrix active zoneCoiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019323
all species →		FamilyActive zone protein ELKSInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18861
all species →		ELKS/RAB6-INTERACTING/CAST PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007274
all species →		Biological Processneuromuscular synaptic transmissionInterproscan
GO:0048167
all species →		Biological Processregulation of synaptic plasticityInterproscan
GO:0048788
all species →		Cellular Componentcytoskeleton of presynaptic active zoneInterproscan
GO:0048790
all species →		Biological Processmaintenance of presynaptic active zone structureInterproscan
GO:0098882
all species →		Molecular Functionstructural constituent of presynaptic active zoneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_055978-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_055978-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
10TPM > 0
7Conditions
91.1Max TPM
2.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 1 4.56 91.14
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 3 2.86 44.79
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 8.85 9.65
unannotated 1 1 6.05 6.05
live coral tissue/skeleton 1 1 10.60 10.60

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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