Gene detail

Detailed information of FUN_055992-T1 in Siderastrea siderea

Genomic Location: contig_105:1595824...1612457
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_055992-T1

CACGCCAAGCAAAACAGTTCGAACTCTGGCAGCATTCAAAATGCCGCCAGGAAAATCACAGAAGAAAGTTCGCCCTACTACAGCTTCGGGGGCATTAGAATCTCACGAATTTGTGGATTTGTTTGACGAACTAAGACCTGCAACTGCTCCGGGAAAAAATCTACTGGGACTTGATCCAACTTACGTTACATCGAGACATCATGTCCCTGGGGTTCCTATCACTTCGAAGTTCAGAGGAAGGCAAGTTTTTGGTGGTATTCCGGAGAATGATTTGAAGGGCACACAAGGGAGAAGAGCTACTTTAGGTGGTGTAGAAGATGTCGAAGAGCACGAAAAACCGAAAAGACCGACCACTGCTGTCGGAGTTGCCAAACAAGTGAAGCTTGAAGACAGGATTACTTTGGAACACTTGAATAAAATGAGACAAGCTTTTGAGGAGGCAGACTCGGATGGAAATGGAACACTTGATCTAGAAGAGTTTAAAGATGTCATCACAAACTTGTTCCATTTTAAATTCAAGAATGAAGATCAGGTCACGGCACTGTTTATGAAAATTGATTCTTCATCAGATGGAGAAATAAATTGGGATGAATTCTGCACATTCATGCAATTGGAGTATGCAGAGAAAGAGGATTCATACTTGCGCTCAAAAGAGACTGCTTTTACTCTGCCTGCCATCATTGCTATGACTGAAAACTCTAACTCGTCACAGAGGGAGCATGTTATACGACTGTGCAATACAGCAGACAACAACTTCCTCGTTGTTAGCAAGGCTGAGAGCTCaaccaagaaaacaaagtgGATAACTGATTTTGTACTTATGCCTCAGTTTACCAAGTTTATTATTTCAACAGGGGATCGGGAAATTCAGTTCTTTGAATTGTCAACATTTGAACCATACTGTCAGATCACAGGGTTAGAGACAACTCCTCTAAGACTTGACTACTGctCAACTGGACCAGACGAGTGTATTATTCTTTATGGCGATAGTCAGGGATGTGTAAATATAATTATGGTGAATTCTGTGGGAGAGACATTAAGAAATTGGAAGAAAATGCCTAAAGTTGAAGGAATAGCTAGTGTAAATATAGATAGTGTTGTAAATTCGGAGAATTCAAGATTTACATGTATCAGATGGAAGGTACATGATGACTGGGTTTCTCAGCTGAAGTATTACGATTCTCTCAGAGCAGTTATTTCTTGCTGTAACCACCCTGAGACCGCTTTGGTTATCGgtcaaACAATGGGCAGCACACATATAGAGTCCCAACTGCGAGACCCCACTGGTGTCTCAAAGAAGGTGCAAAACTCCACAGTCCGTGACATGCAACCAAGACGCCGAATGGACAGTGATCAAACCGTGTTTAAGATTGAATCACTTAAAGTGGATCTTGGTAAGAAAGATGCTGCACTAGCAGCAGCTGAGACCAAGCTAGAAACACTGAAAGCTCATCAGTCAAACCAACGGGAACACATCGGTGTCCTTCAGATATCTCTATCAACTAAGGAGCAGCACATCAAGAACTTGCAAGGCGAGGTGAAGTCTTTGCATAGCCGGCTAGATGAGAGGGAAGACCAGTTAAAACAGAAAGAGAAGAAATTGCTTTCAGTGTCATCGGAACACTCAGAGAATTCATGTGCTGTGGAAAATCTGCAAAGCTTACTAAGTACCAAGGAAAGACAGATCATCAGTCTTAAACAGAAGtgtgaATGTCTGGAGAAAGACCTACATGAGAAAGATTTGTCTGTTACGAGCATTAAAGCTCAGCTGTCATCAGTAAAAGCTGAATATGCCAGCTCATCCAGTACCATTTCCAATCTGGAGGCGACGATACGTGACAAGGAGCGACATATAGAGATCCTACACACATGTAAAATGAGGGTTCTGGCGCACCTTATATAAGGTGCACCAGAACACCTCATTTTACATGTGTGCGAGTGTAAAATAAAGCAAACAGCATAAAAAAGAagcgcgtgacttcgcggtccAGTGAAGAGGATGTGTCACAGAAAATATTTTCTATTTAAGAAATGTCTGCACTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10174 all species →	Cast	RIM-binding protein of the cytomatrix active zone	Coiled-coil	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051242 all species →	Family	WD repeat and EF-hand domain-containing protein	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019323 all species →	Family	Active zone protein ELKS	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44324 all species →	WD40 REPEAT DOMAIN 95	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_055992-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.