Detailed information of FUN_056501-T1 in Siderastrea siderea

Genomic Location: contig_110:328678...329358
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05198
all species →		IF3_NTranslation initiation factor IF-3, N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036788
all species →		Homologous_superfamilyTranslation initiation factor 3 (IF-3), C-terminal domain superfamilyInterproscan
IPR036787
all species →		Homologous_superfamilyTranslation initiation factor 3 (IF-3), N-terminal domain superfamilyInterproscan
IPR001288
all species →		FamilyTranslation initiation factor 3Interproscan
IPR019814
all species →		DomainTranslation initiation factor 3, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10938
all species →		TRANSLATION INITIATION FACTOR IF-3Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006413
all species →		Biological Processtranslational initiationInterproscan
GO:0003743
all species →		Molecular Functiontranslation initiation factor activityInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0032790
all species →		Biological Processribosome disassemblyInterproscan
GO:0043022
all species →		Molecular Functionribosome bindingInterproscan
GO:0070124
all species →		Biological Processmitochondrial translational initiationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02520infC, MTIF3; translation initiation factor IF-3-Mitochondrial biogenesisko03029deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_056501-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
20.7Max TPM
0.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 13.67 20.67
unannotated 1 1 12.34 12.34
live coral tissue/skeleton 1 1 10.46 10.46

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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