Detailed information of FUN_056557-T1 in Siderastrea siderea

Genomic Location: contig_111:374984...466944
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13901
all species →		RH_domRubicon Homology DomainDomainInterproscan
PF21054
all species →		RUBC_PIKBDRubicon, PI3K-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037213
all species →		Homologous_superfamilyRUN domain superfamilyInterproscan
IPR025258
all species →		DomainRubicon Homology DomainInterproscan
IPR052428
all species →		FamilyAutophagy and Host Defense RegulatorInterproscan
IPR048569
all species →		DomainRubicon, PI3K-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45971
all species →		PHOX (PX) DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0043231
all species →		Cellular Componentintracellular membrane-bounded organelleInterproscan
GO:1901981
all species →		Molecular Functionphosphatidylinositol phosphate bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_056557-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_056557-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
63TPM > 0
7Conditions
908.4Max TPM
177.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 16 131.65 435.31
holobiont · low.pH Control.temp 20 13 220.46 676.68
holobiont · control.pH_high.temp 20 13 170.95 552.06
holobiont · control.pH Control.temp 19 15 240.60 908.39
Whole organism 4 4 15.14 20.62
unannotated 1 1 12.44 12.44
live coral tissue/skeleton 1 1 14.97 14.97

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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