Gene detail

Detailed information of FUN_056557-T2 in Siderastrea siderea

Genomic Location: contig_111:374984...466944
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_056557-T2

atggcggacgaAGAGGCGGGAGGGCTGGAACACGCGAAGGAAAGATGTTCTTTGCTGAGATCGCTCAAATATACGACAGAAAGTCTCTTACTGTCGGACACAGAAAATTATTGGGATACTTTTGATGGTCTGAAAAAATTGATTAGCGATTTGGAGCTTATCCTTAAGCACGGGCAACGCGAACAACAGATAACACCTAATGAAATGGACAGTAAAAACATGACATCAGGGCCTTCATTTCAAGACACTGTTCACGAGAATAACACCTTCATCAGAGAAGCTGAAAGAGGGCTTCAAAAGGCATTGTTAGAGCAATGTTTGTTGACATATTTACTGGACTTGGTGAATAACAGAAAACAGATAGTATATGGGTACCGAGAATTTGCATTTCTGAGAAGTGCTCCTCATGTAGAAGCAATGTGTTCCTGTGTGCACGCATTTGAAAAAGGAGACAGTCAGTTGCTCAGTGAGATAGATAATGTTCTGTTAAACAAGAAAAAGTATGTTGAATTGTGGCTGAAAGAAAGTGTTGATTTCAGCTTAAATGATGACATCCAAGGGACTTCCCCTCAAATTCAAATTGTTTACTCAGATAGCACCAATAGCGAGCAGGAGGATTTTCAGAGTGTTTCTTCATATGGCTCACCTGCTGATGTTGACCTGATCACAGATTATCCACTCTACTGTCATGCAGGCCATGACACACAGGATGGTTTTCAGCTCTATTCTTCTGAGCCTGGACAAAACGTTTCCTTTTTACCAAAAAATGGTACTGATCTAAccagtgaaaacaatagaattagTGCATGTGATGGGATAGGAAGGCCTGGACAGAGAAATGAATTAACTTTAACTCAACCATCAAGAATAGGACAAAATGTAAAAGCCACATTGGCCCAAGCTGCCCTTTCTGCTGTTCTGGAGAGTGATGAGACATCAGTTAGTCCTACCACATGGTTTGATGGCCAGAGTGAGGAACAGTTCCACAAAATTAGAAGAGCAAGTACTGGTAGTTTAAATGACAATTTGGTCCACTTAAAAAATGATCTGGTTGATGGCAATAGCATTTTAGAAACCTCTGACCTTAAACAAGGATCACATGACAAGATAGTGACCAGTAATGCTTCACAACTTCATGCACAGAAAATGTTTGGGCACTATAGGTCGAAATCAGATCAAATAGGTGTTCCAAAATCTCAAGAGTTGGCATTTGTTGTTGAACAGCCACAGAATCTGGAAAGGAGACAGCATAATTCTTTCTCCAGGGTTGGTCGACTGTCGTCTTCACTTCCTACTACTTCAGAGTCTTTGTACAGCAGTGATCCTTTCCTAGAGGATCCCTATGAAGAACAATCACTGGCAGAAATGCTGGCATCACAGGATTTCAGCTCATGTGAACTGGATAAGGAGAATGCTCATTTTAGTATATCTGAAGCACTGATTGCTGCCATTGAACAGATGAAGTGTGATGATGTCAACActtcagaagaagaagaagatgaagagaTTCGTCATTTAAAAGAACAACTTGAGAGAAAAAGATGGGAGAAAAAGCAAGGACGACACATAAAAGAGCAATCTGCCTTTAGTGATGAGACAACACATTCAACCACCTCAGTGCCAAGCACAGCCACAACCTCTTCAAAATCTGCGTGCGAGAGCGAAGATGAACTTAGTCATGACTGGGAAGAGATTAGTCCAACTGATGAACAACTCCAGGAATACACCAATAACTTCTGTACATCCACTGCTACCCTGGTGTCTATGGATAAGGAATGTTCAAAAGAACCAGTGGACACTGCCGAGGCCAAGTACTCCCCACAGCTGTCAGCTGAGACTGTAGCCAAGAGTCTACTTCAGAAGTTTGCCGACAGGAGGCACCCAGCTGCATGCGAATTGCAGTGGCTAGTCTCATTTCAAGATGCTCCACAGTGCTTGCTTCCTCTGCCACAGACTGTTGCTGTAGCACCTGATGATGTCCCTCAGGTCACCAGACAAAACTCATTACCGTGTCGTATTCGTGGAAACTCCGAGTGGGCCCCTCCAAGAGCACAGATTATTTTTCATGCTCACAAACCTCCCAGgaGGAAGGCACTTATGGCTCAACAGAACTATAGGTGTGCTGGCTGTGGTATGGCTGTTGCTCCTGATTACATGAAGCGGTTTCGTTATTGCCATTATCTCGGCAAATATTTCTGTAGTAGTTGTCACAGTAACTTTTTGGAAGTAATTCCTGCGAACGTGATCAGGAAGTGGGACTTCACAAAATATGAAGTTTCAAACTTTGCAAAAGATTTACTGCAAAGAATACACTTTGATCCTTTGTTTGATCTTATGGATCTTAATCCCTCTTTATATAAACGATTTCGCGTCTTGGAAGGATTGAAGGATATTCGACAGCAGCTTCATTTCTTTAAAACCTTCACGCAGACATGCCGGAAAGCAAATGAATTAGCTGAAGCATACAGTAAACTGCCAGAGCACATCTGCGGAGAACCTCATCTCTATTCCATGCATGATCTGCTACAGGCCCGCGATGGGGATCTTCTTTTGTTTCTGCGGAGGTTGGCAATTGAGTCCTTGAATCACATTAACCAATGTCAGCTGTGTCTTGCCAAAGGATTTATTTGTGAATATTGCAAGAACGGAGATGATGTGATATTTCCTTTTCAACTGAACAGAGTTATCCAGTGCCCAGACTGTCGCGCGTCATTCCACAAGGAGTGTTTTGTTGCTGGAAAATGTCCCAAGTGTGAGAGGATACGTATAAGAAAGCAGCTGATAAGTGAACCAGTGTCTCAAGAGGAAGGTGATAATACAGGAAGCTGCCTCAGATAA

Transcript

FUN_056557-T2

acttttcagacaacagtctCCCACACAAGCCCCAGCGCAGTCGAAAATAATTACAAGACTACAAGTttatatgtattctaggtaTACAAGAGAAGTTAACCCTGTTCATAAACATGTATACAGAAGATTTTGtaaatCAAGGACCCATATGTGAAATTTGTTGATGTCTTTCAAGAGTCGTtcaagcaaagttttaacaTCATTCGCTCATCGTTGACATTTAGCCTCCTACATAAACCGAGTGAACGTGACGTCACCGGTTAAAAACTTAACTGGAACATTGAGTGCATGTATGTGTGTGAGGACCTGTGCTGTGAGCCGCTCTagggccattccattttatatccacaccccccccccccctatggaagaggtcagtcaaaatttacccctaagaaatcaaagatcaaaagtgccgACACATGCACCCCTTCAGAAATTGCCTAAATTCTCTTTTCCCCTCAGaaaaaaagccaatttttttccaaaccccctcggaaatatttaaaagatcAAAGGCGCCGACACAGCGACCCCCTCAGAAATGATGATCACGGGcccctcagaaaatctcttccatcgggggggtgtggatattaaACGGAATGGCCTTCACCCGCAAAAAGTGCGAGACCATTGCAAGAAAAGGAGTTGCAACGGTTCCGAAAAACCATAGTTTCATTCTGTTTTTTTCCATTGTTTGGTTGTTAAAAAAGCCTCGGtgtttccatgtagttgtttcgGTCAGGTTTCCCCAGCTTCGTAAGCTACTGAAGACAAGCTTTTGACAAAGCTTCTATAAATTAAGCttacagtacatgtacatgtaagcttaaagCTTATTGTGTTGTCGTACTCAGCTCTTACCTTGGCTAGAATCTCCTGACCAGCTCATTTCACTAGTCACTATCACATTGTTGCGAATCGAACACGATCATCAGTCAGCGGTAATATGAATCAAGAGGAAATAAACTTGGCGCTTCATAGCAACAACTAAATCTTCATAATCGCCATCATGCATTGTCAAAACAAATTCTCGTATCCTGGACGAAGAGGTCTGAAACTAGTTGGTGACGTCACGGGATAAGTCATaacaaagatggcggacgaAGAGGCGGGAGGGCTGGAACACGCGAAGGAAAGATGTTCTTTGCTGAGATCGCTCAAATATACGACAGAAAGTCTCTTACTGTCGGACACAGAAAATTATTGGGATACTTTTGATGGTCTGAAAAAATTGATTAGCGATTTGGAGCTTATCCTTAAGCACGGGCAACGCGAACAACAGATAACACCTAATGAAATGGACAGTAAAAACATGACATCAGGGCCTTCATTTCAAGACACTGTTCACGAGAATAACACCTTCATCAGAGAAGCTGAAAGAGGGCTTCAAAAGGCATTGTTAGAGCAATGTTTGTTGACATATTTACTGGACTTGGTGAATAACAGAAAACAGATAGTATATGGGTACCGAGAATTTGCATTTCTGAGAAGTGCTCCTCATGTAGAAGCAATGTGTTCCTGTGTGCACGCATTTGAAAAAGGAGACAGTCAGTTGCTCAGTGAGATAGATAATGTTCTGTTAAACAAGAAAAAGTATGTTGAATTGTGGCTGAAAGAAAGTGTTGATTTCAGCTTAAATGATGACATCCAAGGGACTTCCCCTCAAATTCAAATTGTTTACTCAGATAGCACCAATAGCGAGCAGGAGGATTTTCAGAGTGTTTCTTCATATGGCTCACCTGCTGATGTTGACCTGATCACAGATTATCCACTCTACTGTCATGCAGGCCATGACACACAGGATGGTTTTCAGCTCTATTCTTCTGAGCCTGGACAAAACGTTTCCTTTTTACCAAAAAATGGTACTGATCTAAccagtgaaaacaatagaattagTGCATGTGATGGGATAGGAAGGCCTGGACAGAGAAATGAATTAACTTTAACTCAACCATCAAGAATAGGACAAAATGTAAAAGCCACATTGGCCCAAGCTGCCCTTTCTGCTGTTCTGGAGAGTGATGAGACATCAGTTAGTCCTACCACATGGTTTGATGGCCAGAGTGAGGAACAGTTCCACAAAATTAGAAGAGCAAGTACTGGTAGTTTAAATGACAATTTGGTCCACTTAAAAAATGATCTGGTTGATGGCAATAGCATTTTAGAAACCTCTGACCTTAAACAAGGATCACATGACAAGATAGTGACCAGTAATGCTTCACAACTTCATGCACAGAAAATGTTTGGGCACTATAGGTCGAAATCAGATCAAATAGGTGTTCCAAAATCTCAAGAGTTGGCATTTGTTGTTGAACAGCCACAGAATCTGGAAAGGAGACAGCATAATTCTTTCTCCAGGGTTGGTCGACTGTCGTCTTCACTTCCTACTACTTCAGAGTCTTTGTACAGCAGTGATCCTTTCCTAGAGGATCCCTATGAAGAACAATCACTGGCAGAAATGCTGGCATCACAGGATTTCAGCTCATGTGAACTGGATAAGGAGAATGCTCATTTTAGTATATCTGAAGCACTGATTGCTGCCATTGAACAGATGAAGTGTGATGATGTCAACActtcagaagaagaagaagatgaagagaTTCGTCATTTAAAAGAACAACTTGAGAGAAAAAGATGGGAGAAAAAGCAAGGACGACACATAAAAGAGCAATCTGCCTTTAGTGATGAGACAACACATTCAACCACCTCAGTGCCAAGCACAGCCACAACCTCTTCAAAATCTGCGTGCGAGAGCGAAGATGAACTTAGTCATGACTGGGAAGAGATTAGTCCAACTGATGAACAACTCCAGGAATACACCAATAACTTCTGTACATCCACTGCTACCCTGGTGTCTATGGATAAGGAATGTTCAAAAGAACCAGTGGACACTGCCGAGGCCAAGTACTCCCCACAGCTGTCAGCTGAGACTGTAGCCAAGAGTCTACTTCAGAAGTTTGCCGACAGGAGGCACCCAGCTGCATGCGAATTGCAGTGGCTAGTCTCATTTCAAGATGCTCCACAGTGCTTGCTTCCTCTGCCACAGACTGTTGCTGTAGCACCTGATGATGTCCCTCAGGTCACCAGACAAAACTCATTACCGTGTCGTATTCGTGGAAACTCCGAGTGGGCCCCTCCAAGAGCACAGATTATTTTTCATGCTCACAAACCTCCCAGgaGGAAGGCACTTATGGCTCAACAGAACTATAGGTGTGCTGGCTGTGGTATGGCTGTTGCTCCTGATTACATGAAGCGGTTTCGTTATTGCCATTATCTCGGCAAATATTTCTGTAGTAGTTGTCACAGTAACTTTTTGGAAGTAATTCCTGCGAACGTGATCAGGAAGTGGGACTTCACAAAATATGAAGTTTCAAACTTTGCAAAAGATTTACTGCAAAGAATACACTTTGATCCTTTGTTTGATCTTATGGATCTTAATCCCTCTTTATATAAACGATTTCGCGTCTTGGAAGGATTGAAGGATATTCGACAGCAGCTTCATTTCTTTAAAACCTTCACGCAGACATGCCGGAAAGCAAATGAATTAGCTGAAGCATACAGTAAACTGCCAGAGCACATCTGCGGAGAACCTCATCTCTATTCCATGCATGATCTGCTACAGGCCCGCGATGGGGATCTTCTTTTGTTTCTGCGGAGGTTGGCAATTGAGTCCTTGAATCACATTAACCAATGTCAGCTGTGTCTTGCCAAAGGATTTATTTGTGAATATTGCAAGAACGGAGATGATGTGATATTTCCTTTTCAACTGAACAGAGTTATCCAGTGCCCAGACTGTCGCGCGTCATTCCACAAGGAGTGTTTTGTTGCTGGAAAATGTCCCAAGTGTGAGAGGATACGTATAAGAAAGCAGCTGATAAGTGAACCAGTGTCTCAAGAGGAAGGTGATAATACAGGAAGCTGCCTCAGATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21054 all species →	RUBC_PIKBD	Rubicon, PI3K-binding domain	Domain	Interproscan
PF13901 all species →	RH_dom	Rubicon Homology Domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052428 all species →	Family	Autophagy and Host Defense Regulator	Interproscan
IPR037213 all species →	Homologous_superfamily	RUN domain superfamily	Interproscan
IPR025258 all species →	Domain	Rubicon Homology Domain	Interproscan
IPR048569 all species →	Domain	Rubicon, PI3K-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45971 all species →	PHOX (PX) DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:1901981 all species →	Molecular Function	phosphatidylinositol phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19330	RUBCN; run domain Beclin-1 interacting and cysteine-rich containing protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.