Gene detail

Detailed information of FUN_057110-T1 in Siderastrea siderea

Genomic Location: contig_117:1133652...1139416
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08443 all species →	RimK	RimK-like ATP-grasp domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR013651 all species →	Domain	ATP-grasp fold, RimK-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21621 all species →	RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009432 all species →	Biological Process	SOS response	Interproscan
GO:0016879 all species →	Molecular Function	ligase activity, forming carbon-nitrogen bonds	Interproscan
GO:0018169 all species →	Molecular Function	ribosomal S6-glutamic acid ligase activity	Interproscan
GO:0018410 all species →	Biological Process	C-terminal protein amino acid modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_057110-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.