Gene detail

Detailed information of FUN_057565-T1 in Siderastrea siderea

Genomic Location: contig_125:155507...168001
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_057565-T1

TTGTATAGGACGCAAAAAATTTTAGGAAATGGAATCCTATCCGCCAAATTTAAAGAAGAAGTTTGTAAAGAAGAATGGCTGTCTGATGGCTGTCTGATGGCTGtctgaaaatgctagctgaccttattatCACTGTTTTTTAAGTTCCTCACTTTCTGTGAGTACCGGATGACGAATGACgcaaaacaaaagacagaaaacaattcacCTCCAAGATAGAACCAAAACACGCAATGTCTCACAAACACCTATTTTAggctctaaacgacatatttgtccctccgaaaacaataggaattaatcagtccccttgttacgaaagtctgaggggatgtttcgccaaagaattCTCTACAGTAGTTTCATTGCATTTTagaaatccgaatatctcaggcgatttaggcctgccgaacagatattccaccgaaacgaaccgttgggtgcccctgcggTGGTTTCGGTCCTTCGTTTCGGTCGCCGTTTCGTTTCGGCCAGTTTCGGTCGTTTCGTTTCCGGTATCAGATGTAGTGCCAGGTTTCAGTTTCAGTGGGCCAGTTTTAGTACATGTCTTTGAAGTTTATAGATGCCCCTTTAAAGCTTCCGTATACGTGTTTCTTTTTTTAGTACAATCCAAAATCAAGTGTATAAATGGAAGAAGGAACATGCATGATTTCATGTTTTACTAAGCTTATAGTTTTACAATAGATATGATCATATAGACATACAGCATTTTGAACAGTCAAACAGCTAGGTAACAAGTGATCGAAACAGTTGTCATGTGTAACTGATTAAGCCTCTTGAACACTGAAAATCAAAATTGATCTTTGAAAACAAACGTGAGGGATAACTCGCAGTTAAATAATTTGCACATGTGTTGATCTCATGCCCGAAACGGGACGTCAGAAGGAAATCAAGGAAATTAGGAAATTCTGTGGATTTTCTGCCAGTGGACTGGAAACGAGTCTGACGTCTGCTCATGCGCAGATAAGCTGACGCAACTGCATGTGGAAAATTGGTCTCCCTGCAATTCTGATAAATTGTTGCTGAGAACTACACAAAAAGGTCGTAATTTTGGAAGAATAAGACACAAAAATGGCTGAAGACGAAGCGATGTTCGATCCTacgatgaagaagaagaaaaagaagaagaaggtcCTTTTGGATCTGGATGCTATTGAGGAGCCGAGTGCTCCCTCGAATGTGGATGATAAAAACGAGAATCCTCCTGAAGGCGAGAATCAAGAAAACGAAAACATGGAAGAGAAAGAGGAGAAAGACATCTTGGATCTTGATGACTTTTCGggaatgaagaaaaagaagaaaaagaaaaagaaaccatATGACATGGATGGTCTTGAGGATGCTCTCCAGGATGCATCAACTGACAACAAGTCAGAAGAGACTGGAGGACAAGAAGGAGAGAAGGAATCCACTACTGAAGCTATGGATGATTTAGACTTCAATTTCtctgcaaagaaaaagaagaaaaagaagaagGTTCTTGTTGAAGAGCCTGACGTTGCTGACACTGCAGATACTAAAGCCACTTTAAATGGTGCAGATTCTGATGTGGAAGATGGAGATTTATTAGATGATAGTGAAGACAATGGGCCAGCATGGAGTGATAGAGATTACACATATGAAGAGTTATTAACAAGGGTGTTTGACATAATGCGAGCCAAGAACCCCGAAATGGTAACAGGAGAAAAGAAGAAGTTTGTCATGAAACCACCACAAGTGGTCAGGATAGGAACAAAAAAGACATCATTTGCAAACTTCACAGACATCTGTAAAATCTTACATAGACAGCCAAAACATCTTTTAGCATTTCTGCTGGCAGAGTTAGGAACAAGCGGTTCCATTGACGGGAACAATCAACTCATCATCAAAGGACGTTTCCAACAAAAACAGATTGAAAATGTGCTTAGAAGATATATTAAGGAGTATGTGACGTGTCACACGTGTCGGTCACCAGACACCATTCTTCAGAAAGAAACTAGGTTGTTTTTCATTCAGTGTGAAACATGTGGATCAAGACGATCAGTTGCGAGTATCAAATCAGGTTTCCAGGCTATTACAGGCAAGAGAGCACAGCTGAAGAGTAAGCAACAGTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01873 all species →	eIF-5_eIF-2B	Domain found in IF2B/IF5	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016190 all species →	Homologous_superfamily	Translation initiation factor IF2/IF5, zinc-binding	Interproscan
IPR045196 all species →	Family	Translation initiation factor IF2/IF5	Interproscan
IPR016189 all species →	Homologous_superfamily	Translation initiation factor IF2/IF5, N-terminal	Interproscan
IPR002735 all species →	Domain	Translation initiation factor IF2/IF5 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23001 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0001731 all species →	Biological Process	formation of translation preinitiation complex	Interproscan
GO:0001732 all species →	Biological Process	formation of cytoplasmic translation initiation complex	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005850 all species →	Cellular Component	eukaryotic translation initiation factor 2 complex	Interproscan
GO:0031369 all species →	Molecular Function	translation initiation factor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03238	EIF2S2; translation initiation factor 2 subunit 2	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.