Detailed information of FUN_057781-T1 in Siderastrea siderea

Genomic Location: contig_128:270916...277436
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11712
all species →		Vma12Endoplasmic reticulum-based factor for assembly of V-ATPaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR021013
all species →		FamilyATPase, vacuolar ER assembly factor, Vma12Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31394
all species →		TRANSMEMBRANE PROTEIN 199Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0012505
all species →		Cellular Componentendomembrane systemInterproscan
GO:0070072
all species →		Biological Processvacuolar proton-transporting V-type ATPase complex assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_057781-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_057781-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
7.3Max TPM
0.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 2.14 4.08
unannotated 1 1 5.36 5.36
live coral tissue/skeleton 1 1 7.34 7.34

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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