Detailed information of FUN_057888-T1 in Siderastrea siderea

Genomic Location: contig_130:386450...400446
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05742
all species →		TANGO2Transport and Golgi organisation 2FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008551
all species →		FamilyTransport and Golgi organisation protein 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR17985
all species →		SER/THR-RICH PROTEIN T10 IN DGCR REGIONInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005794
all species →		Cellular ComponentGolgi apparatusInterproscan
GO:0007030
all species →		Biological ProcessGolgi organizationInterproscan
GO:0009306
all species →		Biological Processprotein secretionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_057888-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_057888-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
38.9Max TPM
2.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 30.72 37.25
unannotated 1 1 14.13 14.13
live coral tissue/skeleton 1 1 38.91 38.91

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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