Gene detail

Detailed information of FUN_057940-T1 in Siderastrea siderea

Genomic Location: contig_132:89592...116121
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_057940-T1

ATGAGGAATCTTGAACTTCTGAGGAGTTTTCCATTGCTAGAGCTGGAAGGAGTAGAGGCGCCATTCTGTTTGACAGTGGATTCTGAATGTGGTGTTATCTACACTGCTACTGCTTCAGGAATTACTGGCTTCCAACCATCCAGCCATCAGGCTGTAAGCTCCATTTCACTTGTGACTGATGGATACTTACCAGAAGACGGCAGTGGTTGTGTCATAGGAATACAGCATTTACCAGACTTGGAATCTGTGTGTGTAGCCACTGGAAAAGGAGATGTGATTCTTTGGAATACAGTCACTGAACAGATTGAATGTGTTGGCAGTGTTGACAGTGGGTTGAGGTACATGGTGTGGAGTCCAGATCAAGAACTTGTGGTTTTCATGACAGGAGAAGAGACACTTATTATGATGACAAAAGACTTTGATCCAATATCTGAGTTTCCTTGTCACTCAGAGGAGTTTGGCGAAGAGAAGCCAATTACAGTTGGATGGGGCAAGAAGGAAACACAGTTTCATGGTTCAGAAGGCAAACCAACAGCTGCTACTTTGCAACAAGTTACTGCAAGACCTGCTGATGACTGGGATGACAAGATGCCAAGAATAAGCTGGCGTGGCGATGGACAGTTTTTTGTTGTCAGTGCAATCCACCCTAGAACAGCTGCAAGGACATTAAGAGTGTGGAGCAGAGAAGGGGTACTTAGCTCGACCAGTGAAACTGTTGATGGTTTGGAGCAGGCCTTATTTTGGAAACCATCTGGTAGCTTGATCGCTTCCTCACAACGTAAACCTCACAGACATGAGATTGTCTTCTTTGAAAGAAATGGCCTCAGGCATGGAGAATTTATATTGCCATTTGACAAGGTGGAAGTTAAGGTTGTGGAAGTGGCTTGGAACATTGATTCAACAGTGTTAGCTGTGTGGGCCGAGGAGTTACCACCTAAGGAATTAACCAAGGCACAAGAGTTTGCTCCAAAGTCATATGtTCAGTTGTGGACTGTCAATAATTATCACTGGTACCTGAAGCAGCAGATTGAATTCCCAGCTTCATTGAAAGACAGAGTGGCATGTTTTATTTGGGATCCTGAAGCCTGTTTGACACTGCACATTATGACAGCAGGAGGACAGTATTTCTGTTATAATTGGTGCTGGAACACAGTACACAGTGAAGGAACTTCTGAACATAATTTCTCCACAGTAGCAGTCATAGATGGAGCCAAGTTGCTCCTGACTCCAATGAAGCACATGGTTGTCCCTCCTCCAATGTCAGCGCACACCATAGAGCTGCCGTCACCAGCCTCAATTGTCAGCTTTGGTCCGTCACACTTGTGCAATGACATGGCAGTTTTACTGTCAAATGGCTGTGTAGCAATTTACAAATCACTGATGGAAAATGGCATCAAGGAAGAATTTAAACCCCCAGGGAAGGTGCCAACACATGTGGCAACTTACAGCATAGACACTACAGATCAGCTATCAGTGTGGAGAGGCCCATTAAACTGGCGACAGTTGATCTGGTGGAAGGAAGATACAATTGTTGCAGTAGGATGGGATGCAATGACTCAGTCAGACATTATATGTGAACTGGAGATTCTGaaagaaaatgacaacagtAGGATTGTTCTGAGGCACAAGACAACAACAGAGGAGCCAATCCTTCGCTTGTGTGTCAGCTCTTACTCAGGATGCATGTTTGTTGAACTCATGAATGGAACATTACTCAGATACAACTCAGATGCAAATCAAGCTAATTTATCACCGTGGATAAATAGTCAAGGTGAAGAAGTTTCTCTTCCTCAACCGTGCCAGAGAATGAAGATAGCTTTAGTGGGGAAAGAGGAAGTTGCTTTAGGCCTTACCGAACATTCCAGATTGTATGTTAATAACAAGGAGGTATGTTCAAACTGTACATCCTTTGCGGTTCATGATGAATTTCTTTTACTAACAACGCATGCGCACGCCTTGCGTTGTATCAGCCTAATACCAACCTCTCGAGGATTACCAGTGTTGGTGGAGGACAAACCACACCCTTTAGATGAGAACATCAGACGTGTTGAGAGAGGTTCGCGAATAGTTGTGGCTGTTACAGAAGACACAAAAGTCGTGCTACAGATGCCTCGTGGTAACTTGGAAACTATTCACCCGCGATCATTAGTGTTGTCCTATTTACAGAAGTGTTTGGATGGACTTCATTATCGAGATGCCTTTATAGCCATGCGACGACATCGGATCAATCTGAATTTAATACACGACCACAACTCAAAGCTTTTCCTTGATAATCTGGAGTCATTTATCAGCCAAGTGGAATCTGTGAACTTCATCAATCTCTTCCTTACTGACCTCAAGGACGAAGATGTTACTGTCACAATGTATGCTGATTACTATTCAGAACCAAGACAAACGTCTGATGTAGCAACTCCTGAGGGCAGCAAAGTTAATCGAGTCTGTGACGCCATCCGCAATGCTTTAGAAGCCGCTGGACATAACAGATATCTTCTTTCCATATTAACGACATACGTGAAGAAAACTGATCCAGAACTAGAAAAAGTTCTGACTATCATCAAAGATTTGAAAGCCAATCCTGTAAATTCGTCAGAAGCAGAATGTGTAACGTCCGAGGAAGCCCTTAAATACGTTCTCTTTCTAGTAGACGTCAATCAAATGTATGACGTAGCACTCGGAATGTACGATTTTGAGTTGGTTCTCATGGTCGCTGAAAAATCACAGAAGGATCCAAAAGAATATCTACCTTTTCTAAACAATCTACGCAAAATGGAGACAAATTTCCAGAAGTACACAATCGACAAGTATCTCAAGCGGTATGGGAAAGCCATTCAGCACCTGAGTTTGTGCGGCTCTGAACATTTTGAGGAGCTTGTTTCACTTGTGAAGGAGCACTGTTTATTTAAGGAGGCGTTGAAGCTTTATCCAAAATCCAGCGAGCAACACAAGGAGCTGTCAATTGCTTATGGAGAGAACCTTGTTGAGAACAAGAGATATGATGAAGCTGGACTAGTATTCACCCGGTGTGGGGCTCACGAACAAGCACTGTCCTCCTTCCAGAAGAGCGGGAACTGGAGACAAGTGTTTTGTGTGGCTTCTCTCTTGCGTCACACAGACGAGCAAGTAATTTCATTGGCCAGAGCTGTGGCAGGTTATTTGCAGGGACACAAGCGATCTCTTGAAGCTTCGAGAGTCTTGGAGGAATACGCAAAGGATCCCGAGGAAGCTATTGCTGTTCTTATAGACGAAATGCACTGGGAAGAAGCTCTGAGATTGATGTACAAGCATGAACGCACAGACATCGTAGAGACGCACTTGAAAGGCGCATTAGAGGAAGCTTACAACCATCACGTGAGCACTATAGTAGAGCAGAAGGAACTGTTCGACAAATACACCAAGCGGCTACAAGTTGTTAGGGAAATTAAAGAGCGACAGAGTATAGAATTTCAAGAGAGTGGCCTGGCGCGAGACGACACAGACCTTTACTCTGACACGAGTAGCGTGGGTGACGGCTCGGAATATGCATCTAGCACCAGTTCACGCGGGTCAAGATCCACAGGGAGGTCTTCGAAAAATCGACGCAAAGCTGCTAGCAAGATGTACAGTTTGAAAGAAGGAAGCCGGTTTGAGGACTTTGCGTTGATGAAAGCGCTTTCAGATGTCATTCAAACCGTAAACAAGTCTACTGACGATGTAGGCTCGTTACTGAAGATGATGGTGTTGTATGATCGTGAAGAACAAGCGGCTCTTCTGCAGTCAAGCTTTCAACAACTCATTGCAACAATAGAAAAATCCACAAATATTATCTGGCCACCAGAGGAAACCACGAACAGCCAAACTCAAGTCTCTCAGGTCATGGGCCCAGGAGCTACTGTTAACAGCATCATTGCAGCTATGAGGAGTGATCTGAATACTGCGTCATATAAGCCACAAGGTGAACCTGAAAAACCTAAACCACCGACTGACAAAATATCTACGAGCTGGAAACTAGAGCAACTCCTTTCATAG

Transcript

FUN_057940-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04762 all species →	IKI3	IKI3 family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006849 all species →	Family	Elongator complex protein 1	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12747 all species →	ELONGATOR COMPLEX PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0002098 all species →	Biological Process	tRNA wobble uridine modification	Interproscan
GO:0002926 all species →	Biological Process	tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0033588 all species →	Cellular Component	elongator holoenzyme complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11373	ELP1, IKI3, IKBKAP; elongator complex protein 1	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.