Detailed information of FUN_058166-T1 in Siderastrea siderea

Genomic Location: contig_137:212717...215540
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_058166-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR040191
all species →		FamilyU3 small nucleolar RNA-associated protein 10Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13457
all species →		BAP28Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000462
all species →		Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0030515
all species →		Molecular FunctionsnoRNA bindingInterproscan
GO:0030686
all species →		Cellular Component90S preribosomeInterproscan
GO:0032040
all species →		Cellular Componentsmall-subunit processomeInterproscan
GO:0034455
all species →		Cellular Componentt-UTP complexInterproscan
GO:0045943
all species →		Biological Processpositive regulation of transcription by RNA polymerase IInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_058166-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_058166-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
25TPM > 0
7Conditions
1,067.1Max TPM
117.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 5 121.58 948.18
holobiont · low.pH Control.temp 20 4 75.98 480.33
holobiont · control.pH_high.temp 20 5 107.16 983.67
holobiont · control.pH Control.temp 19 6 202.87 1,067.09
Whole organism 4 3 6.72 13.94
unannotated 1 1 3.81 3.81
live coral tissue/skeleton 1 1 3.34 3.34

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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