Detailed information of FUN_058223-T1 in Siderastrea siderea

Genomic Location: contig_138:471513...483955
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_058223-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
No InterPro signature was detected for FUN_058223-T1. This gene does have a gene model — the search simply returned no hit.
 PANTHER
PANTHER termDescriptionSource
PTHR35678
all species →		PROTEIN STPG4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0001939
all species →		Cellular Componentfemale pronucleusInterproscan
GO:0001940
all species →		Cellular Componentmale pronucleusInterproscan
GO:0003682
all species →		Molecular Functionchromatin bindingInterproscan
GO:0042393
all species →		Molecular Functionhistone bindingInterproscan
GO:0042585
all species →		Cellular Componentgerminal vesicleInterproscan
GO:0044727
all species →		Biological Processepigenetic programing of male pronucleusInterproscan
GO:1901537
all species →		Biological Processobsolete positive regulation of DNA demethylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_058223-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_058223-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
27TPM > 0
7Conditions
672.7Max TPM
56.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 5 38.79 226.25
holobiont · low.pH Control.temp 20 5 67.97 598.91
holobiont · control.pH_high.temp 20 3 26.13 295.85
holobiont · control.pH Control.temp 19 8 108.20 672.66
Whole organism 4 4 21.50 29.46
unannotated 1 1 14.00 14.00
live coral tissue/skeleton 1 1 26.81 26.81

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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