Detailed information of FUN_058298-T1 in Siderastrea siderea

Genomic Location: contig_142:28309...29079
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00067
all species →		p450Cytochrome P450DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050182
all species →		FamilyCytochrome P450 family 2Interproscan
IPR036396
all species →		Homologous_superfamilyCytochrome P450 superfamilyInterproscan
IPR017972
all species →		Conserved_siteCytochrome P450, conserved siteInterproscan
IPR002401
all species →		FamilyCytochrome P450, E-class, group IInterproscan
IPR001128
all species →		FamilyCytochrome P450Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24300
all species →		CYTOCHROME P450 508A4-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006082
all species →		Biological Processorganic acid metabolic processInterproscan
GO:0006805
all species →		Biological Processxenobiotic metabolic processInterproscan
GO:0016712
all species →		Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygenInterproscan
GO:0020037
all species →		Molecular Functionheme bindingInterproscan
GO:0043231
all species →		Cellular Componentintracellular membrane-bounded organelleInterproscan
GO:0004497
all species →		Molecular Functionmonooxygenase activityInterproscan
GO:0005506
all species →		Molecular Functioniron ion bindingInterproscan
GO:0016705
all species →		Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygenInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_058298-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_058298-T1 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP