Detailed information of FUN_059101-T1 in Siderastrea siderea

Genomic Location: contig_235:21046...24988
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for FUN_059101-T1 in SSIDE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13385
all species →		Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026919
all species →		FamilyAdhesion G-protein coupled receptor V1Interproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46682
all species →		ADHESION G-PROTEIN COUPLED RECEPTOR V1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0001965
all species →		Molecular FunctionG-protein alpha-subunit bindingInterproscan
GO:0004930
all species →		Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0007194
all species →		Biological Processnegative regulation of adenylate cyclase activityInterproscan
GO:0010855
all species →		Molecular Functionadenylate cyclase inhibitor activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0071277
all species →		Biological Processcellular response to calcium ionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_059101-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_059101-T1 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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