Detailed information of FUN_059105-T1 in Siderastrea siderea

Genomic Location: contig_237:17052...23897
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for FUN_059105-T1 in SSIDE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08294
all species →		TIM21TIM21DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR038552
all species →		Homologous_superfamilyTim21 IMS domain superfamilyInterproscan
IPR013261
all species →		FamilyMitochondrial import inner membrane translocase subunit Tim21Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13032
all species →		MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM21Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005744
all species →		Cellular ComponentTIM23 mitochondrial import inner membrane translocase complexInterproscan
GO:0030150
all species →		Biological Processprotein import into mitochondrial matrixInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K17796TIM21; mitochondrial import inner membrane translocase subunit TIM21-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_059105-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
33.4Max TPM
1.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 21.65 29.92
unannotated 1 1 33.41 33.41
live coral tissue/skeleton 1 1 32.60 32.60

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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