Detailed information of FUN_059108-T1 in Siderastrea siderea

Genomic Location: contig_238:19022...27100
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for FUN_059108-T1 in SSIDE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF19304
all species →		PGDH_interD-3-phosphoglycerate dehydrogenase intervening domainDomainInterproscan
PF02826
all species →		2-Hacid_dh_CD-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domainDomainInterproscan
PF00389
all species →		2-Hacid_dhD-isomer specific 2-hydroxyacid dehydrogenase, catalytic domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045626
all species →		DomainD-3-phosphoglycerate dehydrogenase, ASB domainInterproscan
IPR006140
all species →		DomainD-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domainInterproscan
IPR029009
all species →		Homologous_superfamilyAllosteric substrate binding domain superfamilyInterproscan
IPR006139
all species →		DomainD-isomer specific 2-hydroxyacid dehydrogenase, catalytic domainInterproscan
IPR029752
all species →		Conserved_siteD-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1Interproscan
IPR036291
all species →		Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR029753
all species →		Conserved_siteD-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved siteInterproscan
IPR006236
all species →		FamilyD-3-phosphoglycerate dehydrogenaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42938
all species →		FORMATE DEHYDROGENASE 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0051287
all species →		Molecular FunctionNAD bindingInterproscan
GO:0016616
all species →		Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptorInterproscan
GO:0004617
all species →		Molecular Functionphosphoglycerate dehydrogenase activityInterproscan
GO:0006564
all species →		Biological ProcessL-serine biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00058serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductaseEC:1.1.1.95
EC:1.1.1.399
Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_059108-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
67TPM > 0
7Conditions
1,108.6Max TPM
289.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 14 219.75 710.94
holobiont · low.pH Control.temp 20 12 276.61 1,046.66
holobiont · control.pH_high.temp 20 17 341.81 1,030.96
holobiont · control.pH Control.temp 19 18 402.64 1,108.58
Whole organism 4 4 23.92 26.60
unannotated 1 1 38.14 38.14
live coral tissue/skeleton 1 1 35.90 35.90

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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