Gene detail

Detailed information of FUN_34604-T1 in Colpophyllia natans

Genomic Location: contig_52:1332350...1334640
NR annotation: KXJ16808.1, Transposable element Tcb2 transposase [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_34604-T1

ACAGTAccgccttaaagtatttacccttttaCCGAGGTTTTGCCGCAGCCGATTCGCGGTTTAATACCGCGTTCTTGCCTCGGCAATGACGCGGCATGCCGAAATTTTACTGCGGTTTTACCTAGGTTTGCCGTGGCACAGAATACCGCAGTTAACAGCAAGACGCGATGCAGTTGAATAGGCCAATATACCTTTTGTTTCGAGTCATTAAATTCTACAATGCCGTCTTTCACACTTCGGTGATAAATCATGTATCCGTCATATTACCAAAAGACCCCGCTGTAAcattgttaatttcacaagaCTTCTCTACATTTTATAAATTTCACGTTGTAAAAGGGAAAGAGAATGAGGGAAATACACGTTTGCTTTGTTTTCGGTTCAAATTACGATGCTATCATGATAAATAAATAGTTCGCTGTCTCGAAGCTTCATGTTGGCATCTTGGCTTTGTATTTTCATCTTTAATGCGAAAATTTACATAAACTTACTTCTTAAAATAAGTGTTtctttcaaataaataaatttcttcgGAATTCGTGCTCAGAGTCCGAAAACCCGCACTGGAAAAGCGACAAGTGACATATTGCAATAGTCAATGACAAGTTATGTAACATTCACGTGTTCCACGTCGTGTCGCATGAGAAATCACATTTTATAGTCACATGCACACGTGGCAGTAGGCATTGAGAGTTGTTTATTTACATCTACGATAGTTTTTGACATATCTGCATCGATCTCGAGAATGTGTCGAACATCAGAATACGTACAGCTAAGATTGCTATCGTTTTACAAATCTAATGTAAAAATTGCTAAAGTTGTTCGGGAATTGTCCAGTGTTGAGGGTATCAAAATTGATAGAAAAACTGTAGCGAAGTATTACAAGCGGTTCAAACTGGACCTTCCTCTCGGTGATTTGCCTCATAGTGGCCGACCGCCAACACTGCAAAGGAGACACTTTGATTTCATTGATCAGAAGCTGGAACATGACAATGAGCTAACATCTGTTGGTCTACAGCAGTTGCTCTATCGAGAATGTGGTGTTAGAGCATCCTTGACCGCCATCAAAACAGTTCGTTGGAATCTTGGCTGGAGGAAGAGGGGACCAAAGTACTGTCAAGCCGTACGTGAAGCGAACCGTGTGGCTCGTTTGGCGTTTTGTGAAAGGTGTATGGAGAATGGTGAGACTTTCGATGATGTTATCTTCACGGATGAGTCGAGCATTTGGTTAGAGCGCCACAGCAAAGTATGCTTTCGAAAGAAGGGTATGCCAGCAAAACAGAAGGCTACTGTTAAGCATCCCTATAAAGTACATGTCTGGGCCGGAATTTCAAAGCGTGGGGCAACTGGTATCCTTGTCTTCACGGGTATTATGAGGAAAGAGTTTTATGTGGACAGTATCCTGAGAGATACACTACTGCCATTTGTCACACAGGCTTTTCCAGATGGATACCGGTTTCAACAAGACAACGATCCAAAGCACAAAAGTCGATTAGCTATGAGATTCATTGAGGAGAACCACATCAATTACTGGCCTACTCCAGCAGAAAGTCCTGACCTGAATCCCATTGAGATGATCTGGCACGAACTGAAGAACTACCTGAGACGTTTCGTTAAACCCACAAACAAGGAGCAGCTCGTCAACGGTATACAGGAGTTCTGGCAGACTGTGACACCAGAGAAATGTCAACGGTACATCGGCCATCTGCGGAAGGTTGTCCCAGAAGTTATCAGACGTGAGGGAAGAGCCTCGGGGTATTAAATAAATACCTTCCTATtaaaaaaacggctcctttaggagccaccaaataaaaagaaagtcaTGACCAACAATGAAAAGCTAGCCACTGTCTCTTAATACATTGATACCTCATTTAATTCTTCTTACAACAGTAGACTTATGTTTAGCAATGTTATAAGCAGTTCCAACTACTGCAGTTGAGGAAATTTACTAGCTTTGGCATTCCATAAAATTTCGATGCATTGACACTTCAAGAAGTCAATTCTTACATTAAATTAAAGGGATGCATGGAATAAAGCCAAAGTGACt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13358	DDE_3	DDE superfamily endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR052338	Family	Transposase_5	Interproscan
IPR038717	Domain	Tc1-like transposase, DDE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23022	TRANSPOSABLE ELEMENT-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07482	K07482; transposase, IS30 family	-	Replication and repair	-	deepkoala