Gene detail

Detailed information of FUN_40042-T1 in Dendrogyra cylindrus

Genomic Location: contig_24:5514109...5520936
NR annotation: CAH3103349.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_40042-T1

gcgatCAAATTTATGTTTTAATTGTTACCAGCTGTTTTTACAAGCACATGTGGCATATTGCAAGGTATAACAAAAAGACGTTGTATTTCCTATCATTTTATAATTAAAAGGCCTTTGAAGCTAATAAGTGAAATATGTTCCTTTCTGAAGAAGGCTAATTAAATCCCTCAGGTCGTTGAGACAATCGATGGATCGGTGAAACCAAGAGAAGATGTAACCAGTGGCGAATTTCTTGAGAGAGTCGGTACCCACTATGTGAGTGCAATTACATGTGGCATAGAGATGGTGGCAAGCCTCAAATTCAAGTCTTCATCAATTTCAGAAAAGGAGCACATCAGAGGCAGCGCCGAAGGACAACTAAATCTTGGAGTTGTTGATGCAGGACTTAAAGCTTCGTTAAATAAACTATCATCAGAATGCAAGGATCTGTCAGGTATCTCTATCAAATGTTACGCCACAGACTTACCAGATAAACTTCCCACGACCCTGGAAGGTCTGGTGTCGCTGATTGAGGAATTTCCTTCTAGACTGAAAAGCATTAATGATGGTAAAGGAATTCCTATGCAGTTTAAACTTCAGCCGGTAAAGAACATCATCCCAACAGCAAACGCCTATCTCCAGAATCAGGCGTTTACGTATCAATTAGAGGAACTGGAAAGCCGCTTTGATGACCTGCGCAATGCTCAGACTCTGGCGAATGCATACCTGCAGAGCGTGAAAGGAACTCACGATGATATAAATGGTTTTATCACTAAGATAGACAACATCTCTCGCGTGTTTCGTTCAGCAATTTCTAGCTTGAACAAACAAGAGGGGCAGGAGCAGATGGACACTTGTATGCAGGCGTACGAGGAAGCTTTTGATGGACTTGATATCGAGGGAAAATTTGTCCGACAATGGAAGAAAATATTGAGCTCAAAGCTTCCTCAGGGAGATCCTCTTACAGTTGTTCTTCTTGGAAAAACTGGAAGTGGCAAAAGCGCCACTGCAAACTCCATTATTGGAAGAGAGTGCTTTGCAGACAGCCCAAGTGGTGGCTCCGTAACACAGTATTGCAGAATTGAGAAGAGAACGGAAGAAAGAGTTATCGCTGTGATAGACACCCCGGGTATTATGGATACAGCCCCAGTCACTGCCATGGATAAACTCAAAGGAAAAGCAGACGAGGCCACTCTAatctacaatcaaaaacaagACGAAGTTCTCATGGAACTATACAATATTTTTGTTATGTCCCCCGACGGCATTGATGCCGTTATTCTAACCATAAAGTACGGTTGCAGATTTGGCATGGAGGATGCTGAAGCTTTAAAAAGACTTCAGGACTTTTTTGGAAAAGAAGCGAACGATCATATGGTCATAATCTTTACACATGGACACACATATAAGTTACTGTTTTTaggacaaaaaattaaaaacaccatcataaaagctttttttcataaaaactcagctcccaaaggtcgcagagtttttatgaaaaaaagctttgatggtgtttttaattttttctcctaaaaacagtaacttatatgtgtgtggtggaatttgTGTGAAAAAGTATTCAATATTTATGTGAAACAGGTCCGCGTGACAGCGCAGTGGTAAAAAACAGAAACTCAAAGTGAGAGAGAAATCACAGTCCCAAAACCAGTGGCCATTTTCGGGAAATTTACACGCATCGAAGTgcaggccgcgcgccagcgcagaaaataattattttaaaaatgcccacactatatattatacaaaagtgtcccagaaacatttaccatttgaacatttatccgcacctgtatataggcgagatgggaagaggaagaaaaggaactatcgatcaaagcaaaaaaaaaccaaaagttAGCAAAAACCAAATAAGGGGAGGTAATTGTGGAGTAATCCCCCAAaacgttaaaaaaaattatacagtACTCGTTtcagaagaacttcttgcagaaatgaaaaaactgAGTCCACAAGATTTAATGGATATTCTTATTGATCattaaaatttatggaaaatgtcccagaattatttttcatttgaacatttatccgcacctgtatataggtgagatggcagacacattagaattaataaaagcacttccgctagaacttcgagaaaaaattctaaacgagtatattaaaataaagctcagacagCGTAAAACGCTAGGCTGGGAAGAAGTGCACAAAGCTtttgaaacaatcccattctgtgaaaggaAACAAAGATTTGTAAAAACGTTGTTTTGTATTGAGCATTTATATTGCGGTGTTAGCGGTATCTGTGTACCATGCAgccgaaaagaaaatataaatcattacgtaatcccaccaTTAGACGAATACCCCAATCGCTATATTGAGAGATGCGATGATGAtctagaacatgaatggatacaatgtaagttaaagggtttagatccaGTTCGAGAACTATTAATGTAAAGCCCGCGCGGCATCGCAGATCAGTCTTTAATCATTTTCagcttctcgcatcgcttccacaacttgatatgttatatgtctgacctcattctgccaaacgggagtagaaagttcgtttatagcatacaaaagagcatgaaacagtacaatcattgtgctatttgtaaagcaatcattctttaataaaatggaag

Protein

Uniprot

Uniprot term	Description
Q9NUV9	GTPase IMAP family member 4 OS=Homo sapiens OX=9606 GN=GIMAP4 PE=1 SV=1
Q9C8V0	Immune-associated nucleotide-binding protein 6 OS=Arabidopsis thaliana OX=3702 GN=IAN6 PE=2 SV=1
Q9T0F3	Immune-associated nucleotide-binding protein 12 OS=Arabidopsis thaliana OX=3702 GN=IAN12 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04548	AIG1	AIG1 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006703	Domain	AIG1-type guanine nucleotide-binding (G) domain	Interproscan
IPR045058	Family	GTPase GIMA/IAN/Toc	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10903	GTPASE, IMAP FAMILY MEMBER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005525	Molecular Function	GTP binding	Interproscan