Gene detail

Detailed information of FUN_40099-T2 in Dendrogyra cylindrus

Genomic Location: contig_29:4545796...4570577
NR annotation: XP_020627851.1, bromodomain adjacent to zinc finger domain protein 1A-like [Orbicella faveolata]
Species abbreviation DCYLI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_40099-T2

ATGAAACTTCCACCTGAGGAGTGGCGCAGAATCATGGAAGAGGAAAaggtgaagaagaagaaacaaatggaagaagaaaaagaaagaaagaaactggAAAGGGAAAGAGAGAAAGCTGAGAACAAAGCTAAGAGAGAAGAGGAAAGAGCAGTCAAGAAGATTGAAAGAGACAAGGAGCGGGAGAGACAGAGAGAAGAAAAGAGGCTAGAAGCCATACGGTTAAAGGAATGGAACAAACCAAGAGAAGACCTGGAGTTGGATGATTTGAAGGATCTGCCCCTGACCACCCCTGTTGCAATAAAGCTTCCATCAGAGCTGTTTGGTGATATGATGATGGTCTTGGAATTTCTCAATGTCTTTGGAAATCTGTTTGACATCAAAGATGAATTTCCTTCTGGCCTTTCATTTGCCATGTTAGAGGAGGCACTGACAGAACACGATGCCGAAGGTGTGTACTATGACTTGTTGCTGTTCTTACTGGGAGCAATACTGCGCACGCACTTagaggaagaagaggaggagggtTTGGATGGCACTCATGACCACGAGCCCCTCATGgatgttgatgatgatggtgatgagaAGTCACAAGCAACTGTTTCAGCATTGGCGACGATGGCAGCTGCTTGGCCGATGCAGCACCAGGGTAAACCACTCCATGAACTGATCATGGACCCGTTTACAAGCTCTGAGCTGTTGAGACTACATCTGCTCTCCTCTGGCGCCAGAATAGGGTGTGGTGAGTCATCTTATCGGTGGCAGCGCCGAGGAGGATTTACCTACAGTGATGACGCAGGAGTAGAGTTTCGCCACTCCGAGCCTCATTTGTTAAAAGCATTAGTAACAGGCAATATCTATGATATGGGTGCTGAAGACAAACTTAAAATCTTGGTGGCTCTCTGTACTCAGCTGATAACATATGCAACAGCCCGAGACTATGTAGAAGAAGGCTTTGACCAGTGTCGCAAGGTCCGTCGTGAGTGGCAGGAGGATCAGTGGGCAGATCAGCggaaggagaaggaggaggctGCTGCAAGGTACCGCCGTAAACAAGAGGAGAGGCAGCGACAGAAGGAAGAGCTGGAGAAACGAAAGAAAGAGAAAGATCAGGAGAAGATAGATGGTGCAAAAGGAGAATCAAGTGCAAAACCTGAGGCTGCAACCAAGAACGGCTCAGAACAGAATGAAGAAGATCAAGTAAAAAAAGACGGTAAGAAAACTGCTAAAAAGAAGGATGAAAACGAGAGCACCTCACAAGCAAGTGAAACAAAGGAATCCCCCACAGTCAATGGAAGCAAACCTACAGAGGATAAGGAAGGCGAACCAAACCAGGCTCCTGTGTTAactaaagaagaagaagaagagctaGCACAGCAAAGACGAGAAGAACGCAAGCGGAAGGATCAGGAGTTCTTGAATCAGCTGGCTAAAGCAGTGGCTAGGAGTGCTATCCAGCCGCTGGGTCGGGACAGGGTGTTCAGGCGGTACTGGGCATTCAGGTCACTGCGGGGATTGTTTGTGGAGGATGATGACCCAGACCAGCACCGGCTGCTGGAACCCGAGTCTGAATCCGAATCAGAGGATAACGAAAAAGAGAGCGGTGATGAACAAAAGGAAGACAGTAAAGAGAACGAAAACTCGACAGTAGACCCAAGCAATTCAGCTGACACTaaacaggaagagaaacttTTGGTCAATGGCCACACTAAGAGCAAAAATAACGCAAAGAATGAAAACTTTGAACGGAAAGTTTTGAACATGTTTAAAGCGTACCAGCTAACAAAGGAAACTTGTGCAGATGAAGACTGGTGTGAATCTTACAAGAGAAGATCTGTTGTTAAATGGTCCTACTTCACTGCCAAAGAGGATGTAGATAAACTGTTAGATGCTCTGAATCCACGAGGATTTCGCGAGAGAGTTTTAAAGGATGCCATCCAACAAGAATACAAACAGCTTACAATTGCAGTGGACAAGTGCCCCTTGAAAGCGGAAATACAGGCTCAGAAAAAGGACTCTAAGCCGAAAGGAAGGCGAGGAGGACGAAACCAACCCACAGTCGACAAGTCACGGTACAAGACTATGGAAGAGTTCCTGGAGGCCAACCTGCGCGATCAGATTCTAGACTTGGAGGACAGAATATGGCAGGGGGGTCTGGGCTCCGTCAGGAATGCCGACCGTGAGACGTGGAGAGCCAAAGTGGAGAATGGTATCTACAGTGACGTGTGCAAGACTGAGGCACATAGCAGTGAGGAGTGCAAGCCTAATGGCGTCAGTGAAGTCAAGGAGAATGGCGACGCAGAGCTTATGGAGGTTGATGCAAGCGTCAAGGATGAAGGCAAACCGAGTGTGGACGACATTGTGGAGGCAACGACTGTGAAGGAGGAGCAACCTATGGACTGTGATGAGGAGAAACAGCCAGTTGTTAATGGAGTCAAAGAGGACATGAAACAAGACTGTCATACAGATTCTGAGGAAGTCAATCAAGTGCAAGACAAGCCAAACGAACATCCGTTCACGGCTGTCCCGTCACATCTACAGTTAGACAGCCGCCCGTCATCCCCTGGGGGTGGTGGTACACGATGCAGTACACCCACACTTAGCTTGGTTGTAGGGCCTGTGGCAGTGAATCCGGCAGTGAAAGAGCTTGCGCTGGAGCTACTCAAGGTAAAGGATAGATTAAGGCTTAGTTTTGTCACTCAGTGCCGTGaattccgaaaaaaaaatttgaacttGTCTTTTTGTTCAAAGGCGTTTTTGATCAATGCTTTCGCATTATAA

Transcript

FUN_40099-T2

AAGAAACACAGGAAAAGAAGCCTTACACATGGAGACCAGGAAGGAGAGAGTGGGCCTGTGAGGAAGAAgaggaaaaagaagaaagaagatgAATCAAAAAATGAAGGAGAAGGGactaagaaaaagaaagaaaagAAGGAGAAAGATGGCAAAAATAAAGAGGCTAAAAAGATGAAACTTCCACCTGAGGAGTGGCGCAGAATCATGGAAGAGGAAAaggtgaagaagaagaaacaaatggaagaagaaaaagaaagaaagaaactggAAAGGGAAAGAGAGAAAGCTGAGAACAAAGCTAAGAGAGAAGAGGAAAGAGCAGTCAAGAAGATTGAAAGAGACAAGGAGCGGGAGAGACAGAGAGAAGAAAAGAGGCTAGAAGCCATACGGTTAAAGGAATGGAACAAACCAAGAGAAGACCTGGAGTTGGATGATTTGAAGGATCTGCCCCTGACCACCCCTGTTGCAATAAAGCTTCCATCAGAGCTGTTTGGTGATATGATGATGGTCTTGGAATTTCTCAATGTCTTTGGAAATCTGTTTGACATCAAAGATGAATTTCCTTCTGGCCTTTCATTTGCCATGTTAGAGGAGGCACTGACAGAACACGATGCCGAAGGTGTGTACTATGACTTGTTGCTGTTCTTACTGGGAGCAATACTGCGCACGCACTTagaggaagaagaggaggagggtTTGGATGGCACTCATGACCACGAGCCCCTCATGgatgttgatgatgatggtgatgagaAGTCACAAGCAACTGTTTCAGCATTGGCGACGATGGCAGCTGCTTGGCCGATGCAGCACCAGGGTAAACCACTCCATGAACTGATCATGGACCCGTTTACAAGCTCTGAGCTGTTGAGACTACATCTGCTCTCCTCTGGCGCCAGAATAGGGTGTGGTGAGTCATCTTATCGGTGGCAGCGCCGAGGAGGATTTACCTACAGTGATGACGCAGGAGTAGAGTTTCGCCACTCCGAGCCTCATTTGTTAAAAGCATTAGTAACAGGCAATATCTATGATATGGGTGCTGAAGACAAACTTAAAATCTTGGTGGCTCTCTGTACTCAGCTGATAACATATGCAACAGCCCGAGACTATGTAGAAGAAGGCTTTGACCAGTGTCGCAAGGTCCGTCGTGAGTGGCAGGAGGATCAGTGGGCAGATCAGCggaaggagaaggaggaggctGCTGCAAGGTACCGCCGTAAACAAGAGGAGAGGCAGCGACAGAAGGAAGAGCTGGAGAAACGAAAGAAAGAGAAAGATCAGGAGAAGATAGATGGTGCAAAAGGAGAATCAAGTGCAAAACCTGAGGCTGCAACCAAGAACGGCTCAGAACAGAATGAAGAAGATCAAGTAAAAAAAGACGGTAAGAAAACTGCTAAAAAGAAGGATGAAAACGAGAGCACCTCACAAGCAAGTGAAACAAAGGAATCCCCCACAGTCAATGGAAGCAAACCTACAGAGGATAAGGAAGGCGAACCAAACCAGGCTCCTGTGTTAactaaagaagaagaagaagagctaGCACAGCAAAGACGAGAAGAACGCAAGCGGAAGGATCAGGAGTTCTTGAATCAGCTGGCTAAAGCAGTGGCTAGGAGTGCTATCCAGCCGCTGGGTCGGGACAGGGTGTTCAGGCGGTACTGGGCATTCAGGTCACTGCGGGGATTGTTTGTGGAGGATGATGACCCAGACCAGCACCGGCTGCTGGAACCCGAGTCTGAATCCGAATCAGAGGATAACGAAAAAGAGAGCGGTGATGAACAAAAGGAAGACAGTAAAGAGAACGAAAACTCGACAGTAGACCCAAGCAATTCAGCTGACACTaaacaggaagagaaacttTTGGTCAATGGCCACACTAAGAGCAAAAATAACGCAAAGAATGAAAACTTTGAACGGAAAGTTTTGAACATGTTTAAAGCGTACCAGCTAACAAAGGAAACTTGTGCAGATGAAGACTGGTGTGAATCTTACAAGAGAAGATCTGTTGTTAAATGGTCCTACTTCACTGCCAAAGAGGATGTAGATAAACTGTTAGATGCTCTGAATCCACGAGGATTTCGCGAGAGAGTTTTAAAGGATGCCATCCAACAAGAATACAAACAGCTTACAATTGCAGTGGACAAGTGCCCCTTGAAAGCGGAAATACAGGCTCAGAAAAAGGACTCTAAGCCGAAAGGAAGGCGAGGAGGACGAAACCAACCCACAGTCGACAAGTCACGGTACAAGACTATGGAAGAGTTCCTGGAGGCCAACCTGCGCGATCAGATTCTAGACTTGGAGGACAGAATATGGCAGGGGGGTCTGGGCTCCGTCAGGAATGCCGACCGTGAGACGTGGAGAGCCAAAGTGGAGAATGGTATCTACAGTGACGTGTGCAAGACTGAGGCACATAGCAGTGAGGAGTGCAAGCCTAATGGCGTCAGTGAAGTCAAGGAGAATGGCGACGCAGAGCTTATGGAGGTTGATGCAAGCGTCAAGGATGAAGGCAAACCGAGTGTGGACGACATTGTGGAGGCAACGACTGTGAAGGAGGAGCAACCTATGGACTGTGATGAGGAGAAACAGCCAGTTGTTAATGGAGTCAAAGAGGACATGAAACAAGACTGTCATACAGATTCTGAGGAAGTCAATCAAGTGCAAGACAAGCCAAACGAACATCCGTTCACGGCTGTCCCGTCACATCTACAGTTAGACAGCCGCCCGTCATCCCCTGGGGGTGGTGGTACACGATGCAGTACACCCACACTTAGCTTGGTTGTAGGGCCTGTGGCAGTGAATCCGGCAGTGAAAGAGCTTGCGCTGGAGCTACTCAAGGTAAAGGATAGATTAAGGCTTAGTTTTGTCACTCAGTGCCGTGaattccgaaaaaaaaatttgaacttGTCTTTTTGTTCAAAGGCGTTTTTGATCAATGCTTTCGCATTATAATATATCCAGAACGAAACGCTTCCAAGACCGAGACCCAGTGATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NRL2	Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens OX=9606 GN=BAZ1A PE=1 SV=2
O88379	Bromodomain adjacent to zinc finger domain protein 1A OS=Mus musculus OX=10090 GN=Baz1a PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005027 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15613 all species →	WSD	Williams-Beuren syndrome DDT (WSD), D-TOX E motif	Family	Interproscan
PF15612 all species →	WHIM1	WSTF, HB1, Itc1p, MBD9 motif 1	Motif	Interproscan
PF02791 all species →	DDT	DDT domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028941 all species →	Domain	WHIM2 domain	Interproscan
IPR028942 all species →	Domain	WHIM1 domain	Interproscan
IPR018501 all species →	Domain	DDT domain	Interproscan
IPR047171 all species →	Family	Bromodomain adjacent to zinc finger domain protein 1A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46510 all species →	BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000228 all species →	Cellular Component	nuclear chromosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008623 all species →	Cellular Component	CHRAC	Interproscan
GO:0031445 all species →	Biological Process	regulation of heterochromatin formation	Interproscan
GO:0045740 all species →	Biological Process	positive regulation of DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_40099-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.