Detailed information of FUN_59425-T1 in Siderastrea siderea

Genomic Location: contig_11:1828472...1829348
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04947
all species →		Pox_VLTF3Poxvirus Late Transcription Factor VLTF3 like FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007031
all species →		FamilyPoxvirus VLTF3, late transcription factorInterproscan

 PANTHER
No PANTHER signature was detected for FUN_59425-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0046782
all species →		Biological Processregulation of viral transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_59425-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_59425-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
18TPM > 0
7Conditions
108.2Max TPM
5.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 4 3.31 32.11
holobiont · low.pH Control.temp 20 4 11.39 108.20
holobiont · control.pH_high.temp 20 3 1.85 13.92
holobiont · control.pH Control.temp 19 6 6.71 90.93
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 1 0.03 0.03

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP