Detailed information of FUN_59606-T1 in Siderastrea siderea

Genomic Location: contig_12:11544633...11545745
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05869
all species →		DamDNA N-6-adenine-methyltransferase (Dam)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008593
all species →		FamilyDNA N-6-adenine-methyltransferaseInterproscan
IPR052055
all species →		FamilyHepadnavirus polymerase/reverse transcriptaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33050
all species →		REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0009007
all species →		Molecular Functionsite-specific DNA-methyltransferase (adenine-specific) activityInterproscan
GO:0009307
all species →		Biological ProcessDNA restriction-modification systemInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_59606-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_59606-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
36TPM > 0
7Conditions
52.3Max TPM
1.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 7 2.26 17.60
holobiont · low.pH Control.temp 20 7 1.46 9.28
holobiont · control.pH_high.temp 20 6 3.23 52.29
holobiont · control.pH Control.temp 19 10 1.27 4.74
Whole organism 4 4 0.50 1.16
unannotated 1 1 0.21 0.21
live coral tissue/skeleton 1 1 0.28 0.28

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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