Detailed information of FUN_60052-T1 in Siderastrea siderea

Genomic Location: contig_18:9416275...9420829
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20209
all species →		DUF6570Domain of unknown function (DUF6570)DomainInterproscan
PF04843
all species →		Herpes_teg_NHerpesvirus tegument protein, N-terminal conserved regionFamilyInterproscan
PF14214
all species →		Helitron_like_NHelitron helicase-like domain at N-terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR046700
all species →		DomainDomain of unknown function DUF6570Interproscan
IPR006928
all species →		DomainHerpesvirus large tegument protein, USP domainInterproscan
IPR038765
all species →		Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR051055
all species →		FamilyPIF1 DNA helicaseInterproscan
IPR025476
all species →		DomainHelitron helicase-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47642
all species →		ATP-DEPENDENT DNA HELICASEInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_60052-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_60052-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_60052-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
13TPM > 0
7Conditions
193.4Max TPM
4.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 4 0.43 6.44
holobiont · low.pH Control.temp 20 2 5.34 100.15
holobiont · control.pH_high.temp 20 3 10.16 193.43
holobiont · control.pH Control.temp 19 2 4.86 83.50
Whole organism 4 0 0.00 0.00
unannotated 1 1 0.20 0.20
live coral tissue/skeleton 1 1 0.96 0.96

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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