Detailed information of FUN_60748-T1 in Siderastrea siderea

Genomic Location: contig_3:18376301...18377653
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04947
all species →		Pox_VLTF3Poxvirus Late Transcription Factor VLTF3 like FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007031
all species →		FamilyPoxvirus VLTF3, late transcription factorInterproscan

 PANTHER
No PANTHER signature was detected for FUN_60748-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0046782
all species →		Biological Processregulation of viral transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_60748-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_60748-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
84TPM > 0
7Conditions
111.7Max TPM
33.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 20 30.18 102.90
holobiont · low.pH Control.temp 20 20 47.79 111.67
holobiont · control.pH_high.temp 20 20 25.96 69.22
holobiont · control.pH Control.temp 19 19 39.82 109.68
Whole organism 4 3 0.37 0.70
unannotated 1 1 0.17 0.17
live coral tissue/skeleton 1 1 0.30 0.30

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP