Detailed information of FUN_61193-T2 in Siderastrea siderea

Genomic Location: contig_4:8098778...8111230
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01693
all species →		Cauli_VICaulimovirus viroplasminFamilyInterproscan
PF00075
all species →		RNase_HRNase HDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002156
all species →		DomainRibonuclease H domainInterproscan
IPR011320
all species →		DomainRibonuclease H1, N-terminalInterproscan
IPR012337
all species →		Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR050092
all species →		FamilyRibonuclease HInterproscan
IPR037056
all species →		Homologous_superfamilyRibonuclease H1, N-terminal domain superfamilyInterproscan
IPR017067
all species →		FamilyRibonuclease H1, eukaryoteInterproscan
IPR009027
all species →		Homologous_superfamilyLarge ribosomal subunit protein bL9/RNase H1, N-terminalInterproscan
IPR036397
all species →		Homologous_superfamilyRibonuclease H superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10642
all species →		RIBONUCLEASE H1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0004523
all species →		Molecular FunctionRNA-DNA hybrid ribonuclease activityInterproscan
GO:0043137
all species →		Biological ProcessDNA replication, removal of RNA primerInterproscan
GO:0090502
all species →		Biological Processobsolete RNA phosphodiester bond hydrolysis, endonucleolyticInterproscan
GO:0000287
all species →		Molecular Functionmagnesium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03469rnhA, RNASEH1; ribonuclease HIEC:3.1.26.4
DNA replication proteinsko03032deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_61193-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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