Detailed information of FUN_62153-T1 in Siderastrea siderea

Genomic Location: contig_65:3725047...3728055
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_62153-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
No InterPro signature was detected for FUN_62153-T1. This gene does have a gene model — the search simply returned no hit.
 PANTHER
PANTHER termDescriptionSource
PTHR20938
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016180
all species →		Biological ProcesssnRNA processingInterproscan
GO:0032039
all species →		Cellular Componentintegrator complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_62153-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_62153-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
10TPM > 0
7Conditions
122.7Max TPM
4.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 1 4.88 97.69
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 3 9.34 122.67
Whole organism 4 4 11.52 13.69
unannotated 1 1 6.88 6.88
live coral tissue/skeleton 1 1 10.19 10.19

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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