Detailed information of FUN_62170-T1 in Siderastrea siderea

Genomic Location: contig_66:4061824...4062586
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08774
all species →		VRR_NUCVRR-NUC domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011856
all species →		Homologous_superfamilytRNA endonuclease-like domain superfamilyInterproscan
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR014883
all species →		DomainVRR-NUC domainInterproscan

 PANTHER
No PANTHER signature was detected for FUN_62170-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0016788
all species →		Molecular Functionhydrolase activity, acting on ester bondsInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_62170-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_62170-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
10TPM > 0
7Conditions
49.7Max TPM
1.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 1.86 32.50
holobiont · low.pH Control.temp 20 3 0.77 5.69
holobiont · control.pH_high.temp 20 3 2.84 49.75
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 1 0.03 0.12
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 1 0.28 0.28

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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