Detailed information of FUN_62885-T1 in Siderastrea siderea

Genomic Location: contig_97:75538...76739
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0012750 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04947
all species →		Pox_VLTF3Poxvirus Late Transcription Factor VLTF3 like FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007031
all species →		FamilyPoxvirus VLTF3, late transcription factorInterproscan

 PANTHER
No PANTHER signature was recorded for FUN_62885-T1 in Siderastrea siderea.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0046782
all species →		Biological Processregulation of viral transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_62885-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_62885-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
26TPM > 0
7Conditions
82.2Max TPM
3.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 6 2.66 16.31
holobiont · low.pH Control.temp 20 7 8.05 82.18
holobiont · control.pH_high.temp 20 5 2.16 24.14
holobiont · control.pH Control.temp 19 5 2.81 35.77
Whole organism 4 2 0.17 0.60
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 1 0.30 0.30

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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