Detailed information of HK74SY85_g15124 in Paraphelliactis xishaensis sp. nov.

Genomic Location: ctg132:154213...182951
NR annotation: XP_020912217.1, DNA mismatch repair protein Msh2 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A7SD85Cell division cycle 5-related protein OS=Nematostella vectensis OX=45351 GN=cdc5l PE=3 SV=1
Q5XXB5DNA mismatch repair protein Msh2 OS=Chlorocebus aethiops OX=9534 GN=MSH2 PE=2 SV=1
P43246DNA mismatch repair protein Msh2 OS=Homo sapiens OX=9606 GN=MSH2 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01624MutS_IMutS domain IDomainInterproscan
PF11831Myb_Cefpre-mRNA splicing factor componentFamilyInterproscan
PF05190MutS_IVMutS family domain IVDomainInterproscan
PF13921Myb_DNA-bind_6Myb-like DNA-binding domainDomainInterproscan
PF05188MutS_IIMutS domain IIDomainInterproscan
PF00488MutS_VMutS domain VDomainInterproscan
PF05192MutS_IIIMutS domain IIIDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001005DomainSANT/Myb domainInterproscan
IPR000432DomainDNA mismatch repair protein MutS, C-terminalInterproscan
IPR016151Homologous_superfamilyDNA mismatch repair protein MutS, N-terminalInterproscan
IPR017930DomainMyb domainInterproscan
IPR032642DomainDNA mismatch repair protein Msh2, ATP-binding cassette domainInterproscan
IPR007695DomainDNA mismatch repair protein MutS-like, N-terminalInterproscan
IPR036678Homologous_superfamilyMutS, connector domain superfamilyInterproscan
IPR036187Homologous_superfamilyDNA mismatch repair protein MutS, core domain superfamilyInterproscan
IPR021786DomainPre-mRNA splicing factor component Cdc5p/Cef1, C-terminalInterproscan
IPR007861DomainDNA mismatch repair protein MutS, clampInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR007696DomainDNA mismatch repair protein MutS, coreInterproscan
IPR047240DomainPre-mRNA splicing factor component CDC5L/Cef1, second SANT/myb-like domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR047242FamilyPre-mRNA splicing factor component CDC5L/Cef1Interproscan
IPR007860DomainDNA mismatch repair protein MutS, connector domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45885CELL DIVISION CYCLE 5-LIKE PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006298Biological Processmismatch repairInterproscan
GO:0030983Molecular Functionmismatched DNA bindingInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0000974Cellular ComponentPrp19 complexInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08735MSH2; DNA mismatch repair protein MSH2-DNA repair and recombination proteinsko03400deepkoala

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