Gene detail

Detailed information of HK74SY85_g23407 in Paraphelliactis xishaensis sp. nov.

Genomic Location: ctg319:303174...304745
NR annotation: XP_020903962.1, cadherin-23 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HK74SY85_g23407

GCTTTACCTGGCACACCTGTCTTTACTATTATAGCCGCTGACCGTGATATTGGAATAAATAGTCAAGTTGCCTACGCAGGGTACTCCCCTGAGGGCACATTTCAAATAGATACTAAGTCTGGTGTTATAAAAACTTTAATTGGTTTGGATTATGAAAAAGTTCAAAGGTAAAATTAACACTCGTACTCGATCATATGCGTGACTCCTTTAACTCCTAACCGCAACCCTTTAACCATACCTCGGGTACACAGGCGTATCGGTTACTCTACATTACTGTCAAAAGTGTTACCCTCTTTAAATAAAGTCGTTATCAAGATTATCTTATTTTACAGGCGTATCATTTAGTCGGTCCTTTCTAGCTCCTTGAAAAATATTGTGACCCTGTAGTGGAGCTTGCTCTGTGGGGTTTTCCCGACCCATGAGGCGAAGCGTataaataaataaaaataaataaaatacaataatatCTCTTGATTTTCCACGACAGAAGAGTTTGTCAACTTAAAGGCccagtatcacctcaaatgcaaaacagtcgtttgtttttgctttgaaatgatgagcttgttcctgatttgctcttttctcaacagaataacaattttcaactcggcataattcaagacgacgcgcaatgcatttcgggtgatacAACCATTTTGTTAACTGTAGTGTGTTCTTTATAGATATGCATTTTATGTGGTTGCAATGGACAAAGGTGTGCCCCAACTCAATAGCACAACACTGCAACTCAACATTACTGTGATAGACGCAAATGATAACAATCCTCAGTTCCCCAAGTCAAACTACATCACCGATCTTTCCGAGTCAGCTCAAATAGGCCATGACGTCATAAAGGTATCAGCAACCGAGAAAGACTCGGGATTAGCATCTGTGATTGGCTACAACATATCAGCTGGAGATGGCGGTGGTCACTTCGTCATTGACCACAAGACGGTATGTTTAAGTGATTGTACTTtatcaatattattaataattcacgaggaaacgcaaaagaaatcataaccgtgaaggagtttgtaaattcctgatacaacacggccactcatattgCTGGTTTAtggtttgcattcaaccacttgagaatcaaaacacaaggacgatggccatgttgatggaacaaacaataggcactaatgagagatcgtctgttgaagtactaccaagatggcggccgtgacgtgtattgCAAATCATCAAATGTATATATTATAACATAAAACATTTTCTGTTGAACAGTATTTTAACTTAAAAGTTCTGTGTGTGCATGCCTTTTGTAGGGTCAAATTAAAGTGCGTAAGGCTCTGGACCGTGAAACCCAGCCAACATACACATTACTGGTGACTGCAAAAGACAGTGGAACACCACCGAGATCTGGCCAGACAACGGTACGTATTCCAATGTATTTATAGATATCTATCAGTTGCCGATCATTCTAGTTAAACGAGTATGCACTTATTTGTTCAGGTCACCATTCGTTTGACGGATGTAAACGATCGTCCACCTGTATTTAAATTCCAAGATTATCAAAAAGAAATTCCTGAAAACAATGCTTTACCTGGCACACCTGTCTTTACTATTATAGCCGCTGACCGTGATATTGGAATAAATAGTCAAGTTGCCTACGCAGGGTACTCCCCTGAGGGCACATTTCAAATAGATACTAAGTCTGGTGTTATAAAAACTTTAATTGGTTTGGATTATGAAAAAGTTCAAAGATATGCATTTTATGTGGTTGCAATGGACAAAGGTGTGCCCCAACTCAATAGCACAACACTGCAACTCAACATTACTGTGATAGACGCAAATGATAACAATCCTCAGTTCCCCAAGTCAAACTACATCACCGATCTTTCCGAGTCAGCTCAAATAGGCCATGACGTCATAAAGGTATCAGCAACCGAGAAAGACTCGGGATTAGCATCTGTGATTGGCTACAACATATCAGCTGGAGATGGCGGTGGTCACTTCGTCATTGACCACAAGACGGGTCAAATTAAAGTGCGTAAGGCTCTGGACCGTGAAACCCAGCCAACATACACATTACTGGTGACTGCAAAAGACAGTGGAACACCACCGAGATCTGGCCAGACAACGGTCACCATTCGTTTGACGGATGTAAACGATCGTCCACCTGTATTTAAATTCCAAGATTATCAAAAAGAAATTCCTGAAAACAAT

Protein

Uniprot

Uniprot term	Description
Q9NYQ6	Cadherin EGF LAG seven-pass G-type receptor 1 OS=Homo sapiens OX=9606 GN=CELSR1 PE=1 SV=1
Q9HCU4	Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens OX=9606 GN=CELSR2 PE=1 SV=1
O88278	Cadherin EGF LAG seven-pass G-type receptor 3 OS=Rattus norvegicus OX=10116 GN=Celsr3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126	Domain	Cadherin-like	Interproscan
IPR039808	Family	Cadherin	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027	CADHERIN-23	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016342	Cellular Component	catenin complex	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0098742	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan