Gene detail

Detailed information of HK74SY85_g24051 in Paraphelliactis xishaensis sp. nov.

Genomic Location: ctg346:124953...126521
NR annotation: XP_018667005.1, low-density lipoprotein receptor-related protein 4 isoform X2 [Ciona intestinalis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HK74SY85_g24051

ATGATGGACGAAGACAACGATATGTGTTCATCAAAGTCAACGTCATCTGTTATACGaacgtcatcagttgaaccagcgacatcgaaatcaacatcatcagtagtgccaacgacatcgaaatcaacgtcatcagttgcgccaacgacatcagaaccaacgtcatcagttgcgccaacgacatcagaatcaacgtcatcagttgcgccaacgacatcagaatcaacgtcatcagttgcgccaacgacatcagaatcaacgtcatcagttgcgccaacgacatcagaatcaacgtcatcagtagtgtcaacgacatcagaatcaacgtcatcagttgcgccaacgacatcagaatcaacatcatcagtagtgccaacgacatcagaatcaacgtcatcagttgcgccaacgacatcagaatcaacgtcatcagttgcgccaacgacatcagaatcaacgtcatcagttgcgccaacgacatcagaatcaacatcaccagtagtgtcaacgacatcagaatcaacgtcaccagttTCAACAATGCCTGATGGTAATGTAATAATCTAAAGACAATGACCTGTATTTTTTTGTTATTGTTGTTATTTGTTTGTTTATGTCAATGTATGTTTTAGGTAAAATATGTAAGGATGTGGAATTCCAGTGTCTCGTAGATAATAAATGTATCCCAGTCTTATGGAAGTGTGATGGCGACGTAGACTGCTTGGACGGCTCAGACGAAGACAATGCAGTCTGCTTAGGTAATCGTCTCTTTAGTGACAGTCTTATTTGATGTACCTTCCTTTTTAGCTCACAAATACATTGTTTTTTATCATTTACATGTAGATTATAAGAAGCCCTGTCGACCCAATACATTCACGTGTGATAACAATACATGTATACCGCTGGCCTGGAAATGTGATTCACAAAGTGACTGTTCTGATGGTAGCGATGAAAACCCTTCATTGTGTGATAACAACCATGGTAAATAACATGTTACATTTGTAGCTATCTTTAAAATTGAATGGTTGCAACTTACGTATCTGTCACATCCCTTCTTAAATACAATAATGTGTAATGGGGGTAGGGTGGGGGAGCACTTGTTTAGAGAATGGATGGGTATGTGCGTCTACAATCGGACTGGGGACGAcggaccggaaatgcatttcttaactcaaaactccaccagcctaaaaccggttgcgcaggccatccatattaagtcattattatgagcaATGCCTTCTAAAAGTAccccccccccccccctccccacacacacacacacacacacacacacacacacGGGATGCTGCAATCACAAGTTCCCACCATTTTATGAATACAGAACTACTTTTAGTTTGCTCAAATCAAAGCCTTCCTTTGGTTTAAGTGACACAGCATGACTGGTGTCAAAGTGTGGATGATTATCATAAACACGATACTGTGAAACTATTGCAGTATTCTATTGGTTGCAGTGTGATGCTCTTATTCATTTCCTGTATTTGAATGTTGCAAGTTGTAACATGATCGTATTTGTACACCTTTGTTTCTGTTTCAGGACGTTCCACCAGAATGATGGACGAAGACAACGATATGTGTTCATCAAAGTCAACGTCATCTGTTATACGaacgtcatcagttgcgccaacgacatcagaatcaacgtcatcagttgcgccaacgacatcagaatcaacgtcatcagttgcgccaacgacatcagaatcaacatcaccagtagtgtcaacgacatcagaatcaacgtcaccagttTCAACAATGCCTGATGGTAAAATATGTAAGGATGTGGAATTCCAGTGTCTCGTAGATAATAAATGTATCCCAGTCTTATGGAAGTGTGATGGCGACGTAGACTGCTTGGACGGCTCAGACGAAGACAATGCAGTCTGCTTAGATTATAAGAAGCCCTGTCGACCCAATACATTCACGTGTGATAACAATACATGTATACCGCTGGCCTGGAAATGTGATTCACAAAGTGACTGTTCTGATGGTAGCGATGAAAACCCTTCATTGTGTGATAACAACCATGGACGTTCCACCAGA

Protein

Uniprot

Uniprot term	Description
Q9JI18	Low-density lipoprotein receptor-related protein 1B OS=Mus musculus OX=10090 GN=Lrp1b PE=1 SV=1
C0HL13	Low-density lipoprotein receptor-related protein 2 OS=Sus scrofa OX=9823 GN=LRP2 PE=1 SV=1
P98164	Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens OX=9606 GN=LRP2 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR050685	Family	Low-density lipoprotein receptor	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24270	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan