Gene detail

Detailed information of HK74SY85_g25379 in Paraphelliactis xishaensis sp. nov.

Genomic Location: ctg404:20027...21567
NR annotation: XP_028514279.1, collagen triple helix repeat-containing protein 1-like isoform X3 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HK74SY85_g25379

ATGAAGCCCTACACCATAGGGTTGCTGTTGTGTGTGCTACTATTTGTTGTTCCATCGACCACCAAGTCAGCTTCCAACCAATCACCTGCAAAATACGTAAATCAACAACTACATTTCAGTAATGTTTGATATATTGGTCGACAAGCTATTATTACGATATATATTAGTTCCTGTAAATAACTGGATCATATATTTATGTTGAAATTTGATACAAAATAAATTATATTCCTATAAGTTACATATTATTTATATATATTCATGTTATGGTTTGTATTATTCAGTCATGCTTTTCCTCTTTGGCGGGACGCCCTGGCATACCCGGTCTACACGGTAAACCCAGTGCTCCTGGACGAGACGGCAGGGATGGACGTGAAGGAATCCAAGGCAAACGAGGTCCACGTGGATTCCACGGATCTCCGGGAAAGCAAGGATCCCCCGGAGCTCCTGGTAGAACCGGTAAATCTGGTCCAAGGGGACCTCGCGGTTTAAATGGAGGAGTCGGACCAAAAGGAGACAAGGGAGAGCCTGGACCGAGAGGTCTTTCACTTTATTCAAACTGGAAGGAATGTTCGTGGAAAAAATTTAACGATGGCAGGGACAACGGGCTTATTAAAGTTTGTATATACACTTCTATATGTTAATACGTGTATCATGATCTCTCTATTGAAGATTCGGAAGGATAAATTGATGAAAGGCAAATTATTTCTTGTTTGTGTTGTAACACGCATCTATTTTTAAATAAAACATTGAAAAGGTGATCGATTAAGGATTCATTATATTTCTTtttattaaatagacctcatggtttttctgtaaaataggtaattggtaatataaaattctaacgaaatttcatgcgggatctgagtgacatattttccatttatctcacatcatacaaaatacaaccaatcagagagcagaattgccgttacatattccgcagtattccacgcttccttcccacaatgcaatacgattctttggtgtgggataaataggttatgcaatgagttctcgttgtataccatgggacatcccacTGTATATCGATGGCGTTATTTCATGATGCTTGGAATAAATGTTTTGTCTTTTGTGTGTGTGTGTCTATTTaccactcgagatagaagataaacttcatatcttagagccaccgtgtaataTCTCTATGTGTTTTCTGTGGTTTTCAGGATTGTGTTTTCAAAAAGAAATACAGTCATACCATCCTCCATGTCTACTGGAATGGCGACTTCAGGATCGCTGGATGTAACCATTGCTGTAAACGTTGGTTCTTTACTTTCAATGGTGGTGAGTGCAATTCCCCTAGAACCATTGACGGAGCGCTGTACATGAGGATAGGAAAGAACCTCAGTATCCACCGCGTCCGCCATATCGAAGGTCACTGTGACAAGATCCACAAAGGACACGTGCGCGTTGGCTTCAACGTAGGGAACTGTCCAGGGTACGGGAATGCTGACGCATACACCGGAGCGTTTACCACAAGCCGTCTGTTCATAGAGGAGGTACCCAGGCCTCAGCCGATGAAGCCCTACACCATAGGGTTGCTGTTGTGTGTGCTACTATTTGTTGTTCCATCGACCACCAAGTCAGCTTCCAACCAATCACCTGCAAAATACTCATGCTTTTCCTCTTTGGCGGGACGCCCTGGCATACCCGGTCTACACGGTAAACCCAGTGCTCCTGGACGAGACGGCAGGGATGGACGTGAAGGAATCCAAGGCAAACGAGGTCCACGTGGATTCCACGGATCTCCGGGAAAGCAAGGATCCCCCGGAGCTCCTGGTAGAACCGGTAAATCTGGTCCAAGGGGACCTCGCGGTTTAAATGGAGGAGTCGGACCAAAAGGAGACAAGGGAGAGCCTGGACCGAGAGGTCTTTCACTTTATTCAAACTGGAAGGAATGTTCGTGGAAAAAATTTAACGATGGCAGGGACAACGGGCTTATTAAAGATTGTGTTTTCAAAAAGAAATACAGTCATACCATCCTCCATGTCTACTGGAATGGCGACTTCAGGATCGCTGGATGTAACCATTGCTGTAAACGTTGGTTCTTTACTTTCAATGGTGGTGAGTGCAATTCCCCTAGAACCATTGACGGAGCGCTGTACATGAGGATAGGAAAGAACCTCAGTATCCACCGCGTCCGCCATATCGAAGGTCACTGTGACAAGATCCACAAAGGACACGTGCGCGTTGGCTTCAACGTAGGGAACTGTCCAGGGTACGGGAATGCTGACGCATACACCGGAGCGTTTACCACAAGCCGTCTGTTCATAGAGGAGGTACCCAGGCCTCAGCCG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050632	Family	Nematode Cuticular Collagen	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24637	COLLAGEN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25700	CTHRC1; collagen triple helix repeat-containing protein 1	-	Cilium and associated proteins	ko03037	deepkoala