Genomic Location: ctg414:68919...77795
NR annotation: XP_020915816.2, RNA 3'-terminal phosphate cyclase [Exaiptasia diaphana]
Species Paraphelliactis xishaensis sp. nov. · all data for this species · gene families
| CDS |
| HK74SY85_g25590 |
| Transcript |
| HK74SY85_g25590 |
| Protein |
| HK74SY85_g25590 |
| UniProt accession | Description |
|---|---|
| Q4R3J0 | RNA 3'-terminal phosphate cyclase OS=Macaca fascicularis OX=9541 GN=RTCA PE=2 SV=1 |
| Q2HJ88 | RNA 3'-terminal phosphate cyclase OS=Bos taurus OX=9913 GN=RTCA PE=2 SV=1 |
| O00442 | RNA 3'-terminal phosphate cyclase OS=Homo sapiens OX=9606 GN=RTCA PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001897 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01137 all species → | RTC | RNA 3'-terminal phosphate cyclase | Domain | Interproscan |
| PF05189 all species → | RTC_insert | RNA 3'-terminal phosphate cyclase (RTC), insert domain | Domain | Interproscan |
| PF00226 all species → | DnaJ | DnaJ domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000228 all species → | Family | RNA 3'-terminal phosphate cyclase | Interproscan |
| IPR036869 all species → | Homologous_superfamily | Chaperone J-domain superfamily | Interproscan |
| IPR037136 all species → | Homologous_superfamily | RNA 3'-terminal phosphate cyclase domain superfamily | Interproscan |
| IPR001623 all species → | Domain | DnaJ domain | Interproscan |
| IPR013792 all species → | Homologous_superfamily | RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta | Interproscan |
| IPR023797 all species → | Domain | RNA 3'-terminal phosphate cyclase domain | Interproscan |
| IPR013791 all species → | Domain | RNA 3'-terminal phosphate cyclase, insert domain | Interproscan |
| IPR036553 all species → | Homologous_superfamily | RNA 3'-terminal phosphate cyclase, insert domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11096 all species → | RNA 3' TERMINAL PHOSPHATE CYCLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003963 all species → | Molecular Function | RNA-3'-phosphate cyclase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006396 all species → | Biological Process | RNA processing | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
HK74SY85_g25590.Genes whose expression across the transcriptome samples of Paraphelliactis xishaensis sp. nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Paraphelliactis xishaensis sp. nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
