Gene detail

Detailed information of HK74SY85_g29823 in Paraphelliactis xishaensis sp. nov.

Genomic Location: ctg858:11328...12518
NR annotation: XP_015747113.1, PREDICTED: Werner syndrome ATP-dependent helicase homolog [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HK74SY85_g29823

atgatattagttataattccactgaacgctctagtagaagatcaaatcaagactttaaaatcttgtggcattgaaacctctatacttagccatgaaaacggacctaagcagcagctagaagaagattcagactctgacattgataccgacagtaattctttctgtgatgaagaagtcaatcagaaaagtgatgaatatctaacacgtaatcgaattctgttttcgcatcctgaagctttcatatcctccaagttgggaagacgaattctactatcaaaagtatgtcaagacagaatggtggcatgtgtcatcgatgaggcacacctagtggaggattgggggtacgaatttcgtccagatttttcaagattatgtcagcttcactctttcttcccacaggcaccatttttagcattaacagccacagctcccaagtcacaccgagaaatcataaccaaatcattaaatcttcaaaaccctcacattataattgctaacagggaaaacatatttattcacaaagaaaaaagaaagcctgcatcattcggtattgaaagttttgagtcaatactccttcccattgcacaagatctaaagctaaaactcatttcataccctctcacttttattttccttccattgaaatattgtggctatgcatacaagttattttcacatgttctgggtgaatttagcaactatccagtaaactctaagaagcagcctgaaaactgtttgtatgctcaataccactcaccccagacaaaagaaatgaaggaacaaattctaaatcaactcacaggaaaatcagcacaaaaaatcactcgtgtaatctttgccactgttgcaattggaattggggtcaacattccagatgttcgacaagtcatacacatttgtgttcctagaacgttggaatcctatttccaagaaataggcagagctggaagagacaggaaaccatcaaaggctctcttgtactacaatgggttagacattgcctcaaataaacctggaatgacaacagagatgagggaattttgccgactagaaaccagttgcctacgtgaagcattgttgaaacacatgggttcaccatcagttgagaccacaagagatcctcatttatgctgcagtaactgcttaaaagactgcttgtgtgattcctgcAGAGTGCACACAAATAATCCTatgatattagttataattccactgaacgctctagtagaagatcaaatcaagactttaaaatcttgtggcattgaaacctctatacttagccatgaaaacggacctaagcagcagctagaagaagattcagactctgacattgataccgacagtaattctttctgtgatgaagaagtcaatcagaaaagtgatgaatatctaacacgtaatcgaattctgttttcgcatcctgaagctttcatatcctccaagttgggaagacgaattctactatcaaaagtatgtcaagacagaatggtggcatgtgtcatcgatgaggcacacctagtggaggattgggggtacgaatttcgtccagatttttcaagattatgtcagcttcactctttcttcccacaggcaccatttttagcattaacagccacagctcccaagtcacaccgagaaatcataaccaaatcattaaatcttcaaaaccctcacattataattgctaacagggaaaacatatttattcacaaagaaaaaagaaagcctgcatcattcggtattgaaagttttgagtcaatactccttcccattgcacaagatctaaagctaaaactcatttcataccctctcacttttattttccttccattgaaatattgtggctatgcatacaagttattttcacatgttctgggtgaatttagcaactatccagtaaactctaagaagcagcctgaaaactgtttgtatgctcaataccactcaccccagacaaaagaaatgaaggaacaaattctaaatcaactcacaggaaaatcagcacaaaaaatcactcgtgtaatctttgccactgttgcaattggaattggggtcaacattccagatgttcgacaagtcatacacatttgtgttcctagaacgttggaatcctatttccaagaaataggcagagctggaagagacaggaaaccatcaaaggctctcttgtactacaatgggttagacattgcctcaaataaacctggaatgacaacagagatgagggaattttgccgactagaaaccagttgcctacgtgaagcattgttgaaacacatgggttcaccatcagttgagaccacaagagatcctcatttatgctgcagtaactgcttaaaagactgcttgtgtgattcctgcAGAGTGCACACAAATAATCCT

Protein

Uniprot

Uniprot term	Description
P71359	ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recQ PE=3 SV=1
Q9CL21	ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain Pm70) OX=272843 GN=recQ PE=3 SV=1
Q9FT73	ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13710	DNA HELICASE RECQ FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006268	Biological Process	DNA unwinding involved in DNA replication	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0009378	Molecular Function	four-way junction helicase activity	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan