Gene detail

Detailed information of HK74SY85_g3047 in Paraphelliactis xishaensis sp. nov.

Genomic Location: ctg12:1879743...1880804
NR annotation: KXJ20127.1, ELAV-like protein 3 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HK74SY85_g3047

ATGACAGCGTATGATTACAATCATGGGACTGTCCTCGAGCTCCCTAAATTGGAAGATGGTAACCAATGGCAACCATACAATGCAGCACAGGTAGCCCAACCCAATGAACCACAAGCATCAAGCAACAGCAAAACCAACCTTATAGTGAATTATATTCCACAAGGGATGACAGATGAGAATTTTAAGAAACTTTTCAGTGCCGTTGGGCCTTTAAAGAATAGCAAGGTCTGCCGTAACAAGGCAACAGGGTGGAGTTATGGCTATGGTTTTGTGGACTATTTTACTCAAGAACACGCACAGGCAGCCATTGATCAGTTAAATGGACATCAGATTGAAAATAAACGTCTGAAAGTAGCATTTTCTCGGCCAGATGCAGACCAAAACAAGGGGTCTAATTTGTACCTGCGTAGTCTCCCAAAGATATTAACAGAGAATCAACTGAGAAAACATTTTGAAGGTTTTGGAAACATAGTTAATTGCCGTGTGTTGCAAGACAAAGCTACTGGGTTGTGCAACGGTACTGGTTTTGTTCTATTTGAAAAGAAACCTGAAGCCCAAGCAGCCATAGATGGTATGAATGGTAAAGTCCTACAGGGTAGTACAGAACCACTGATTATACGATTTGCTGATGACAACTCTACAAAACTAAGGCCTCCAATTAAATCCTTTGTACCAGGGGTTTATAGTCCACAGTCATATAATATGCCCGCACCAGGTCCTATACGCCCACCCATGAATAGATATCAAGCTCGTTTTAACCCACTCGCTGGTGGACCCAACATGTTTCAGGCACACAACAAAGCAACTGACAGCGGTGGATTTACCCTATATGTGTATAATGTTGGCTTCCATCCCAATGAACAAAACCTCGCTGCCGTGTTTTCACAGTATGGTGTTGTTAATAAAGTGGATATTATCTGGGACTGGCAGAAGAATCAAAGTAAAGGATTTGCATTTGTTTCCATGGCAACTCGCGAGGCAGCTCAGATGGCCATTGACAACCTTAATGGCTATATGTTTGCTAATAGAGCATTGCAAGTATCATTTTATACAGGGAAAAAGATGACAGCGTATGATTACAATCATGGGACTGTCCTCGAGCTCCCTAAATTGGAAGATGGTAACCAATGGCAACCATACAATGCAGCACAGGTAGCCCAACCCAATGAACCACAAGCATCAAGCAACAGCAAAACCAACCTTATAGTGAATTATATTCCACAAGGGATGACAGATGAGAATTTTAAGAAACTTTTCAGTGCCGTTGGGCCTTTAAAGAATAGCAAGGTCTGCCGTAACAAGGCAACAGGGTGGAGTTATGGCTATGGTTTTGTGGACTATTTTACTCAAGAACACGCACAGGCAGCCATTGATCAGTTAAATGGACATCAGATTGAAAATAAACGTCTGAAAGTAGCATTTTCTCGGCCAGATGCAGACCAAAACAAGGGGTCTAATTTGTACCTGCGTAGTCTCCCAAAGATATTAACAGAGAATCAACTGAGAAAACATTTTGAAGGTTTTGGAAACATAGTTAATTGCCGTGTGTTGCAAGACAAAGCTACTGGGTTGTGCAACGGTACTGGTTTTGTTCTATTTGAAAAGAAACCTGAAGCCCAAGCAGCCATAGATGGTATGAATGGTAAAGTCCTACAGGGTAGTACAGAACCACTGATTATACGATTTGCTGATGACAACTCTACAAAACTAAGGCCTCCAATTAAATCCTTTGTACCAGGGGTTTATAGTCCACAGTCATATAATATGCCCGCACCAGGTCCTATACGCCCACCCATGAATAGATATCAAGCTCGTTTTAACCCACTCGCTGGTGGACCCAACATGTTTCAGGCACACAACAAAGCAACTGACAGCGGTGGATTTACCCTATATGTGTATAATGTTGGCTTCCATCCCAATGAACAAAACCTCGCTGCCGTGTTTTCACAGTATGGTGTTGTTAATAAAGTGGATATTATCTGGGACTGGCAGAAGAATCAAAGTAAAGGATTTGCATTTGTTTCCATGGCAACTCGCGAGGCAGCTCAGATGGCCATTGACAACCTTAATGGCTATATGTTTGCTAATAGAGCATTGCAAGTATCATTTTATACAGGGAAAAAG

Protein

Uniprot

Uniprot term	Description
Q28GD4	ELAV-like protein 2 OS=Xenopus tropicalis OX=8364 GN=elavl2 PE=2 SV=2
Q60899	ELAV-like protein 2 OS=Mus musculus OX=10090 GN=Elavl2 PE=1 SV=1
Q12926	ELAV-like protein 2 OS=Homo sapiens OX=9606 GN=ELAVL2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR002343	Family	Paraneoplastic encephalomyelitis antigen	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10352	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13208	ELAVL2_3_4; ELAV like protein 2/3/4	-	Spliceosome	ko03041	deepkoala