Gene detail

Detailed information of HK74SY85_g3272 in Paraphelliactis xishaensis sp. nov.

Genomic Location: ctg14:927292...930312
NR annotation: XP_032234218.1, heterogeneous nuclear ribonucleoprotein H3 isoform X3 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HK74SY85_g3272

ggagggggtggtggaggtagtggtggtggtTTCTCTTTTGGATTTTCTGGCCAAAGTGAAACAGGTCATACTGTGTCTATGAGAGGGCTTCCATACGCTGCCAAAGAAGCTGACATCAAACAGTTCTTTATGCCTCTTAATCCTGTGGAAATTAAAATTAAGTGGCGACCAGATGGAAGCAATTCGGGTGTGGCAGAAGTTGACTTTGCTACTCACTCTGATGCACAGGCAGCTATGTCAAAggataaacaatccatgggtaggttagcttcttgtgttattataaacaatccatgggtaggttagcttcttgtgttattataaacaatccatgggtaggttagcttcttgtgttattataaacaatcatgggtaggttaacttcttgtgttattaaagggataaacaatccatgggtaggttagcttcttgtgttagtaaagggataaacaatctatgggtaggttagcttcttgtgttagttaagggataaacaattcatgggtaggttaacttcttgtgttattaaaaggataaacaatccatgggtaggttagcttcttgtgttagtaaagggataaacaatctatgggtaggttagcttcttgtgttagtaaagggataaacaattcatgggtaggttagcttcttgtgttagtaaagggataaacaatccatgggtaggttagcttctcatgttagtaaagggataaacaatccatgggttggttagcttctcatgttagtaaagggataaacaacatgggtaggttagcttcttgtgttagtaaagTCCTTAAAGTAGGGACTATATTCTAGaccccaccccacccccaccccaccccacccaccccaccccaccACTTTCAAAAAAGCTAGGGATTGATTGACCCCCACCCACTTTCAAAAGCTAGGGATTCACAGTTTGAATCCCATTGTCATCGTCATTCAGGGCTTTCAATAAGTTTCAAAGTAGGCGGCTGTCTTGTAAAAGTATGCATATTGGACAACCGCTGAACCAGAGAGACTGCATGTTACCCAGTTATGTATTCTTTGCACTCCAATTATCCAAAATGGCAACAGTAAATAGCGCAAAGTCCATAAGCAGAATTGCGTCAAAAACAAAACCGAATAAAGTGAAATATTTCAGCTGCAAAATCTAGTGTATTTTTATTCAACTCTGAAGTAATAAATATAAGTAAAAGTTTTATTGAATTGAAAGCTTTCTACATCAATTCTGAGTAAAAGTCTGAGATAACCTTTATTCTTCTGAGCTTGGTGTGAAAGTAACTGGCGATAAGGAGCAAAGTAGCAGGCGGTTTATTGTCGGTAGCCACCTATTGAAATCTCTGGTCACTATCTGTCCCCTttactgcaattctcagtattatgtgaattcagacattcgaatagtgtttattttttttaagttttgattttgattgacagaagtgaaaaaccaagttctaaccaaaatgtttgaatgtctgagtttgcataatattgagaacagcagtaaGATCTTTTTGGGTGGAGGAGTACAGACATTATCCCCTATAATTTAGTTTTTTTTTTTTTAGTTATGACTCCTTTTATTTAGCATATCATTGAATTTTGTGTTTTTATTGGTGTTGGTAGGTCACAGATATATTGAGCTGTGTCTCAATTCTACACCTGATGGTAGTGGAGGCGATGGATGGAACAATAACAATAGAGACAGCAATAACCAAGGTGAGGTTAttttatttattttattttattagctttttcctctaactaaggcagggacaccgcaacagctttcgccaattactgtgggccctgtagtgtaagcacaggcactgaaggtggtcgtcacaagcgttctcagtgggtcttttacgtccgccttatacagagtttagagtaaaagcagacggggcctacgttttaacgtccttatccaagaagacatgaaggtctaaccatttgcagatgtaattacaaaggtagctcctttgcctcggttatgttagtccagcggcgggatttgaacccacgacctcccgcatgaaagaccgacgctcaaccaactgagacaatggaccgCAGTTATGATTGTGACTGATGAattctgggattgtaaccacatgactgaaaattcctctagaaataaataacaatgaaacagccaccatgttggatgaactaacaagagaagctaatgCTATGATGTAATGTGCAACCCACAAATTGGGGCCCATGCAAGAAAACCAATATTTTTCTCCTATTTTCTCTATCTTCTTCACGCTGATACAATTCATTTATTTCTTTTTTTGTGACTGGATTCCACTAAATATTTAACTTTATTTTGATTTAGATGGAAACTTTGGAGCCTCGAATATGGGCAACACAAGTGGTCAGTTCAACAATAACAGCAGCAACTTTGGTGGCAGTAACAGTAACTATACCAGCTTTGGTAACACCTCGAATCAGCCTGCTGGTAACCAAAGTGGTAACTATGCCAACCAAGGGAACactggaaactttggcggtcaaacaacaacaactggaagttttggtggtcaacaacaacagcaacaacaaccacaacaacTAATGAATGCTAATCCTACACAGACTAACATGACAAACCAGCCGTTTAACCAAAACACTACTAACTTTTCCAGTGCACAAAATACAGGCAGCTTTGGAGGGCAGAGTAATGTTAGCTATGGCCAGTCAGGCTATGGCAGTTACAGTAACCAAACCACCCCTTATCAAACACAGCAGGGTACAAACTTCACAACACAGGGAGGACAAGTGCAGGGATCAACAGCATTTAATCAAATgcagcaacaaccacaacaacaacagcagcaacaacagccacagcagcaaacccaacaacctcaacaaacaacaTATGGTAACACTGCCTACGGAACTACAACAGGAGATTCATTCTTCACAAACATGAATCAGATGAAACAAGATACAACGGCGCAAGCTGGCACTACTACCATGACATATACTGGATACggagggggtggtggaggtagtggtggtggtTTCTCTTTTGGATTTTCTGGCCAAAGTGAAACAGGTCATACTGTGTCTATGAGAGGGCTTCCATACGCTGCCAAAGAAGCTGACATCAAACAGTTCTTTATGCCTCTTAATCCTGTGGAAATTAAAATTAAGTGGCGACCAGATGGAAGCAATTCGGGTGTGGCAGAAGTTGACTTTGCTACTCACTCTGATGCACAGGCAGCTATGTCAAAggataaacaatccatggGTCACAGATATATTGAGCTGTGTCTCAATTCTACACCTGATGGTAGTGGAGGCGATGGATGGAACAATAACAATAGAGACAGCAATAACCAAGATGGAAACTTTGGAGCCTCGAATATGGGCAACACAAGTGGTCAGTTCAACAATAACAGCAGCAACTTTGGTGGCAGTAACAGTAACTATACCAGCTTTGGTAACACCTCGAATCAGCCTGCTGGTAACCAAAGTGGTAACTATGCCAACCAAGGGAACactggaaactttggcggtcaaacaacaacaactggaagttttggtggtcaacaacaacagcaacaacaaccacaacaacTAATGAATGCTAATCCTACACAGACTAACATGACAAACCAGCCGTTTAACCAAAACACTACTAACTTTTCCAGTGCACAAAATACAGGCAGCTTTGGAGGGCAGAGTAATGTTAGCTATGGCCAGTCAGGCTATGGCAGTTACAGTAACCAAACCACCCCTTATCAAACACAGCAGGGTACAAACTTCACAACACAGGGAGGACAAGTGCAGGGATCAACAGCATTTAATCAAATgcagcaacaaccacaacaacaacagcagcaacaacagccacagcagcaaacccaacaacctcaacaaacaacaTATGGTAACACTGCCTACGGAACTACAACAGGAGATTCATTCTTCACAAACATGAATCAGATGAAACAAGATACAACGGCGCAAGCTGGCACTACTACCATGACATATACTGGATAC

Protein

Uniprot

Uniprot term	Description
Q8VHV7	Heterogeneous nuclear ribonucleoprotein H OS=Rattus norvegicus OX=10116 GN=Hnrnph1 PE=1 SV=2
P31943	Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens OX=9606 GN=HNRNPH1 PE=1 SV=4
O35737	Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus OX=10090 GN=Hnrnph1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050666	Family	Epithelial Splicing Regulatory	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan