Detailed information of HK74SY85_g3624 in Paraphelliactis xishaensis sp. nov.

Genomic Location: ctg16:519524...536690
NR annotation: XP_020901737.1, coatomer subunit beta isoform X2 [Exaiptasia diaphana]
Species abbreviation PXISH · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P23514Coatomer subunit beta OS=Rattus norvegicus OX=10116 GN=Copb1 PE=1 SV=1
Q9JIF7Coatomer subunit beta OS=Mus musculus OX=10090 GN=Copb1 PE=1 SV=1
A0JN39Coatomer subunit beta OS=Bos taurus OX=9913 GN=COPB1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005975 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14806
all species →		Coatomer_b_CplaCoatomer beta subunit appendage platformDomainInterproscan
PF01602
all species →		Adaptin_NAdaptin N terminal regionRepeatInterproscan
PF07718
all species →		Coatamer_beta_CCoatomer beta C-terminal regionDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029446
all species →		DomainCoatomer beta subunit, appendage platform domainInterproscan
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan
IPR002553
all species →		DomainClathrin/coatomer adaptor, adaptin-like, N-terminalInterproscan
IPR011710
all species →		DomainCoatomer beta subunit, C-terminalInterproscan
IPR016460
all species →		FamilyCoatomer beta subunit (COPB1)Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10635
all species →		COATOMER SUBUNIT BETAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006886
all species →		Biological Processintracellular protein transportInterproscan
GO:0016192
all species →		Biological Processvesicle-mediated transportInterproscan
GO:0030117
all species →		Cellular Componentmembrane coatInterproscan
GO:0005198
all species →		Molecular Functionstructural molecule activityInterproscan
GO:0030126
all species →		Cellular ComponentCOPI vesicle coatInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006888
all species →		Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0006891
all species →		Biological Processintra-Golgi vesicle-mediated transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K17301COPB1, SEC26; coatomer subunit beta-Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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