Gene detail

Detailed information of HK74SY85_g7586 in Paraphelliactis xishaensis sp. nov.

Genomic Location: ctg46:932264...935122
NR annotation: XP_020898176.1, Hermansky-Pudlak syndrome 1 protein homolog [Exaiptasia diaphana]
Species abbreviation PXISH · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

HK74SY85_g7586

ATGCATTATGGAGCAAGTTTGGAGCTGCTTAAAGTTGAGTTGCCATCTGCACGTAAGAAAGCGTGGCAGTCATTAGGTCATTTGATTGATGCATGGCAGTTATTATTTACACAACAGCACAGTTTTCTTGTTGAGGTGAGCATAATTATATTAAAGGTAATGTAAGttatgtcttctcggataaggatgttaaaccgtataactctgtattatgttgacgtaaaagatcctgttgtattgttcgcaaagatcgaataggggattgtctcccggtacaaGGGGTGGCGAATGGTTAATATTATTTGAGACTTGCAGAGCCCCAGGTTTTAAAGAACTGTGCTAGAGAATCTTTCTAGTGTTTTTCTTGTGAAGTAATTTTGGGCATGAGACTCAATGGGTTAGGTGAGGATAGTAGTGGTCTTTATTGAGTTGGGTTGAAAGGTGCTCCAGTCCATAgcctcctctgcagggaactctgttcatgttgggatacctgtgttatggtggagaagagaatggaagctaatggagaagaagaccaaggccacaggaaacccaaaattatccccagtgatgcctgcggaggaagctaGCTCCACCACTTGTTAGCAAATAATAATTTCTATTTCCTCACAATGGATGAAAGTTTTTATACTGTCCAAAAGGACAAGGGGTCACAAGCATCCTTAATATTGGTTTAACACTGGCTGTCTTTTTACAACTGCAGGCAATAGAGCGTATACAAGTAAATCAGTCTCTCAGTGAAATGGCTGTTAGTTTACTTCATGATGTTGTCATGACAACAGCAAAAAGTAAAAGTGATCAGACAGCTGTTCATGCGTTGTTGCTGGTGAATACAAAACTATTTGCACTGTATTCAAGGTAGGGAATACTGACACTACATTAACTTTTAAACCGTCAatattattattgacattgtaattgaatattgatattgcaaattggtaGGTAGTTGGTAAAGTGTTTACTGACCAATAGCTACTCACAAATTACTAGCAACCAATAAACAACCAATGTCGACTGTGACTTAAaccaattattattgacaccttaccaaccacttactgacaccttaccaaccacttactgacaccttaccaaccacttactgacaccttaccaaccacttactgacaccttaccaaccacttactgacaccttaccaaccacttactgacaccttaccaaccacttactgacaccttaccaaccacttactgacaccttaccaaccacttactgacaccttaccaaccacttacctaccattcacccacttacATACTTCTCATAATCTTATTTTATTTCAGCCGCAATGCATCAGAGCTTCAAGCAGCTGACATCCTCATGATAACAGTCATTGTACAAAAAATATTTCCACATTCCTCTCTAACAACTCCATCCTCTAGCACAAGGGCTCCTCAACCTCTAGCTAAATGCGTGGTTACCAATGGAGGTCCCTCATTATCACAAGACATTGTTCATAACTGCAATACCACTGACTTTCCTGCAAGTGAACATTATCATACAAGATCACCGCCTATTGCAATCAATAGGGCTACAGATCGACAAAGCATAAGTTCATCTTCAGATGAAAAGTTTTATTCCCCACCCTCTACTCCCCCAACTAGTGATTTGGTCCAAGAAACTATGAATACATTTGGATTAGCAGATGATGAATTCTTTTCTCCAAGAACTAACACACCAAGGAATAGTGTGCCACAGGTTAGTACTTCAAAATCTTTCATTTGAGTGTTATTAtgctttgtagagcagatttcctttgactgtgaaaagctgtgtgccatgcagtgcagtgctgtgtctcagtgttttgattggataagacaaacatgttgaccaatcaaaatgcttagacacagcagcacggcattgcactgcacagagctttgcacagtcatacgaaaactgctctTTTGACTAGTAACAAATTATTATAGTTGTGGTCGAGTAGTTAGAGCCCTgggggtacttcggggtaaaaagggtatggatgaccgtagaaaaacctaaaaaaataccctaaaaaatatcccaagccgtaaaaactgcccaccctaaaaaatactttgtatcctgaaattgtaccctaaaaaataccagttttcaagatagaaccaggacttcgctttaacaaccctaaaaaaatccaaattgaccatttcaacccctaaaaaatacgacggccatccctaccactcgcatatagggattacaaccccAGGAGCTAGAGCCTTTGACTTCCAACCTGGTTGTCAATGGTTCAAGTCCCAGTGCCGCTGCGAGGGTGTAAGCATGTATCCTTAGCTTGACATTGCTTATACAAATGgatgatataaggatgggtgaaaagaaatatgtaacaccatgtaaaaatagtgacttactttactgacatttcaagccttagcccttcatgggaataaaagggttcaaaacgtcagtaaaataagttactatttttacacaggtttaaaaatttcgatcctttcacacattcttTGACATTGCTTAGCTTCACATAGCCTTAATGGGGACCTAGCATGCCGGAGACGGTAACATGCTTACTATACAATGGACTTGCCCCTGTCTAGTATAGTCAGCATTGTGTTGGCGTGACTCAAGTGCTGTAGACGAGTACCACCTGCATGATAGTCTGTTGAGGATCAGGAGGATAGATTAACCTTTTTTGAAACGAATAATATTGTTATTAGGATTTTGCTGGTGCAGTAGAAGACAAAACCATGACTGAAGAAATCCCACCTGAGTCCAAGGAAAACAAAAATGAATATTTTAGACAGTCCAGTATTCCTTAGATGCATTATGGAGCAAGTTTGGAGCTGCTTAAAGTTGAGTTGCCATCTGCACGTAAGAAAGCGTGGCAGTCATTAGGTCATTTGATTGATGCATGGCAGTTATTATTTACACAACAGCACAGTTTTCTTGTTGAGGCAATAGAGCGTATACAAGTAAATCAGTCTCTCAGTGAAATGGCTGTTAGTTTACTTCATGATGTTGTCATGACAACAGCAAAAAGTAAAAGTGATCAGACAGCTGTTCATGCGTTGTTGCTGGTGAATACAAAACTATTTGCACTGTATTCAAGCCGCAATGCATCAGAGCTTCAAGCAGCTGACATCCTCATGATAACAGTCATTGTACAAAAAATATTTCCACATTCCTCTCTAACAACTCCATCCTCTAGCACAAGGGCTCCTCAACCTCTAGCTAAATGCGTGGTTACCAATGGAGGTCCCTCATTATCACAAGACATTGTTCATAACTGCAATACCACTGACTTTCCTGCAAGTGAACATTATCATACAAGATCACCGCCTATTGCAATCAATAGGGCTACAGATCGACAAAGCATAAGTTCATCTTCAGATGAAAAGTTTTATTCCCCACCCTCTACTCCCCCAACTAGTGATTTGGTCCAAGAAACTATGAATACATTTGGATTAGCAGATGATGAATTCTTTTCTCCAAGAACTAACACACCAAGGAATAGTGTGCCACAGGATTTTGCTGGTGCAGTAGAAGACAAAACCATGACTGAAGAAATCCCACCTGAGTCCAAGGAAAACAAAAATGAATATTTTAGACAGTCCAGTATTCCTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60HF3	BLOC-3 complex member HPS1 OS=Macaca fascicularis OX=9541 GN=HPS1 PE=2 SV=1
Q92902	BLOC-3 complex member HPS1 OS=Homo sapiens OX=9606 GN=HPS1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005783 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19037 all species →	Fuz_longin_2	Second Longin domain of FUZ, MON1 and HPS1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026053 all species →	Family	BLOC-3 complex member HPS1	Interproscan
IPR043971 all species →	Domain	FUZ/MON1/HPS1, second Longin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12761 all species →	HERMANSKY-PUDLAK SYNDROME PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0031085 all species →	Cellular Component	BLOC-3 complex	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20411	PRR5, PROTOR; proline-rich protein 5	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.