Gene detail

Detailed information of HK74SY85_g8874 in Paraphelliactis xishaensis sp. nov.

Genomic Location: ctg58:2798554...2800324
NR annotation: XP_020908807.1, profilin-2 [Exaiptasia diaphana]
Species abbreviation PXISH · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

HK74SY85_g8874

GGAGATGTTAACAAAGCAGCGATTTTTGGGCACGATGGAAGTTGCTGGGCGACAAGTGCGGGATTTTCGGTGAGTGAAATGCCGGGTAGTTGTGAAACAACGCTCTTCAGTCGACTTTAGGACACTTTATCAAAATAAGTGTTGAGTTAAGTGACTGCGAAGTTCAGTATTTAATATCTTTTGTCCTTTGAATAATCTTTTCACACCTTAATGTGCTAATTAATGATACCGAATCCAATTGTTTAGTGTTAATCGCTCTCACATCACGCTAACTGAAAGTGAAAAATCGTTGCTCGCTTTACGAAGCATTGAATATATCTCCTTCATCAATACCCAAATACAACTACACTAGTCTATGCACTAAAATATATCAAATATCAAAGCAATTTCTGGATGATTCAAGAAATAAGGCAGAATATTTCAAATTTCGCTATGTTTCGCCTCGGTGATCGCAAACCAAATGCTCGAACATGAAACCTCAGATTTTTTAAATTCAATTCCTCCCCAAATTCTTCTTGTTTATAACTAGTAGGTGTCACTATATATCAAAGCGAAAGGATTGCGTTTTTATCGACCTCTAACTTCCGCTGGATGTGCCGAGACGCGTTCGTTGCTTGAATGAACGAGCATATTTCCTGTCAATATTTGAAGTATTTGTTAGTGATCAGATCTGTAAACAAATCCACATTTTTGTACTTCAATAAATCTCCAGTCAGGATATTGGTCATTTCTGGGACTGACAATTTTTTCTGTGGCCGAAAAGAAGGGAGCTTGCTATACATGAATCAAAATGGGGCTAGTTCAGCTTCAGGACATGAAAATTTTTGCAGGGTGAAGTCGTCCTTTGATAAACGAAGCATTTTCAGGGGTGGGGCACATCTAGAGGTGAATCACTGCAAAATATTCATACCATTAGAGTGGTTTCACCTCGACCGTTGCAGGTTAAGAAAAATAATCTATTTTTGAAGGTACATTTTCAAATTAGTTCAATTTATGCACATTTGATCATCATTCTCATTATGTGTccccagggaggcacctctggggatccaggggcatttgttgagatttgtcggatgtttcttaccgagggggtggggtaaaacaccagttttgttcacTGAGATCTCATTCAAGTGCCCGACCCTGGGGATTTCTAATGTCATGTCAGCGGTCTACAATCAAAACGATTCCCGGATATTCGAGCTTCACGCAAGAGGGCTGTTGAATAGGTGACAACATTTATATGCTAATACTGCAAAGATCTTTAGCTGTGTTTAATAATATTTAAACTGATATCCGAGTGAGGTATATCACAGAAGTCCTTATTTTATGccctcagggggtggggatttgttagaattcccctgccccacacccaggggtatttcacgaggtttgattgggcaaatctcccagggtgcccccctgggggaagccactgatcaatgCAttatgtattcttatcttatcttatcttatctCCTGCTTTGGTATATTATAGGTTTCATCAGAAGAAGCAAAAGAGCTAATCAAGAGCATGAACGATGGTAGTGTCTCAGGCAAACATATAGCTGGTAAAAAATACATGATGCTCAGAAATAACAAAGAACGCAAATGTGGTTACCTCAAGCTTAAAGAACATGGTGGTTTCTGTGTTTGCCTGACGAAGCAAGCTCTTATTTTAGGAGGCTTTGACGACGGGGGTAATGCCGGAATGTGCAACAATACCGTGGAAAATCTGGCTCAGTACCTCGTGGACAGTGGCTATGGAGATGTTAACAAAGCAGCGATTTTTGGGCACGATGGAAGTTGCTGGGCGACAAGTGCGGGATTTTCGGTTTCATCAGAAGAAGCAAAAGAGCTAATCAAGAGCATGAACGATGGTAGTGTCTCAGGCAAACATATAGCTGGTAAAAAATACATGATGCTCAGAAATAACAAAGAACGCAAATGTGGTTACCTCAAGCTTAAAGAACATGGTGGTTTCTGTGTTTGCCTGACGAAGCAAGCTCTTATTTTAGGAGGCTTTGACGACGGGGGTAATGCCGGAATGTGCAACAATACCGTGGAAAATCTGGCTCAGTACCTCGTGGACAGTGGCTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P19984	Profilin-2 OS=Acanthamoeba castellanii OX=5755 PE=1 SV=3
Q9FE63	Profilin-3 OS=Arabidopsis thaliana OX=3702 GN=PRF3 PE=1 SV=2
P23412	Profilin OS=Tetrahymena pyriformis OX=5908 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005294 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00235 all species →	Profilin	Profilin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005455 all species →	Family	Profilin, eukaryotic type	Interproscan
IPR048278 all species →	Family	Profilin	Interproscan
IPR036140 all species →	Homologous_superfamily	Profilin superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11604 all species →	PROFILIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0003785 all species →	Molecular Function	actin monomer binding	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0042989 all species →	Biological Process	sequestering of actin monomers	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05759	PFN; profilin	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.