Gene detail

Detailed information of HOLI00001.G49306 in Hydra oligactis

Genomic Location: HOLI00001:349707...352521
NR annotation: WP_095159207.1, MULTISPECIES: endopeptidase La [Pseudomonas]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00001.g49306.t1

ATGAAGACAACCCTCGACTTGCCTCTCTTGCCATTGCGCGACGTCGTTGTTTATCCGCACATGGTCATCCCGCTGTTCGTGGGGCGCGAAAAATCCATCGAGGCCCTTGAGGCTGCGATGACAGGCGAGAAGCAAATTCTTCTCCTGGCTCAAAAGAATCCTGCCGATGATGATCCGGGTGAAGATGCCCTTTATCGCGTCGGTACCATCGCTACCGTACTCCAGTTGCTGAAACTGCCCGATGGCACCGTCAAGGTGCTGGTTGAAGGTGAACAGCGTGGCGCGGTCGAGCGTTTTGTCGACGTCGACGGGCATATCCGCGCCGACGTGACCCTGATTGACGAAGTCGATTCCGCAGACCGCGAGTCGGAAGTCTTCGTACGCAGCCTTCTGTCCCAGTTCGAGCAGTATGTGCAGCTTGGCAAGAAGGTTCCGGCGGAAGTCCTTTCTTCGCTCAACAGCATCGATGAGCCGGGTCGCCTGGTCGACACCATGGCCGCGCACATGGCGCTCAAGATCGAGCAAAAGCAGGAAATCCTCGAAATCATCGACCTGTCCGCCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCTGAAATCGACCTGCTGCAGGTAGAAAAGCGCATCCGTGGCCGGGTCAAGAAACAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCATTCAGAAAGAGCTGGGCGATAGCGACGAAGGCCATAACGAAGTCGAAGAGCTGAAAAAGCGCCTCGAGGCCGCTGGCCTGCCGAAGGATGCCTATGCCAAGGCGCAGGCCGAGCTGAACAAGCTCAAGCAGATGTCGCCGATGTCGGCTGAAGCCACGGTTGTGCGCTCTTACCTCGACTGGCTGGTGCAGGTGCCGTGGAAGGCGCAGAGCAAGGTCCGTCTCGACCTGGCCAAGGCCGAGGAGATCCTCGATGCCGACCACTATGGTCTGGACGAGGTCAAGGAACGCATCCTCGAATATCTCGCCGTTCAGAAACGCGTCAAGAAAATCCGTGGCCCGGTGCTGTGCCTGGTCGGCCCACCTGGCGTAGGTAAAACCTCGCTCGCCGAGTCCATCGCCAGCGCTACCAATCGCAAGTTCGTGCGCATGGCCCTCGGTGGTGTGCGCGATGAGGCCGAGATTCGTGGTCACCGGCGTACCTACATCGGTTCGATGCCAGGTCGCCTGATCCAGAAGATGACCAAAGTCGGTGTGCGCAACCCGCTGTTCCTGCTCGACGAGATCGACAAGATGGGCAGCGACATGCGCGGCGATCCGGCCTCTGCGTTGCTGGAAGTGCTCGATCCCGAGCAGAACCACAATTTCAACGACCACTACCTGGAAGTCGATTACGACCTCTCGGACGTGATGTTCCTCTGCACCTCCAACTCGATGAACATCCCGCCGGCGCTTCTGGACCGGATGGAAGTCATCCGCCTGCCGGGTTACACCGAAGACGAGAAGATCAACATCGCGGTCAAGTACCTGCTACCCAAGCAGATCAAGGCCAACGGCCTGAAGAAGACCGAGCTGGAAGTCGATGTGGCCGCCATTCGCGACATCGTCCGCTACTACACCCGCGAAGCAGGTGTGCGTGGGCTGGAGCGTCAGATCGCCAAGGTTTGCCGCAAGCTCGTCAAGGAGTCGACCGGGCAGAAGCAGGTATTGGTCAAGGTTGGCAGCGACCGGCTTGAGCACTACCTCGGCGTACGCAAATTCCGCTACGGCCTGGCTGAGCAGCAGGATCAGGTCGGGCAGGTCACCGGACTGGCCTGGACGCAGGTCGGTGGTGAGTTGCTGACCATCGAGGCGGCTGTCATTCCGGGCAAGGGCCAGCTGATCAAGACCGGCTCGCTGGGCGACGTCATGGTCGAATCGATCACCGCTGCGCAAACCGTGGTTCGCAGCCGCGCGCAGAGCCTGGGTATCCCGCTCGACTTCCATGAGAAGCGCGACACCCACATCCACATGCCGGAAGGGGCGACGCCGAAGGATGGTCCGAGTGCCGGTATCGGCATGTGCACCGCTCTGGTTTCGGCGCTGACCCAGATTCCCGTGCGTGCCGATGTGGCCATGACCGGTGAGATCACATTGCGTGGTCAGGTGCTGGCGATTGGCGGTTTGAAGGAAAAGTTGTTGGCCGCACATCGGGGTGGAATCAAGACCGTGATCATTCCCGAAGAGAACGTGCGTGATCTGAAAGAAATTCCTGACAATATTAAGCAGGATCTTCAGATTAAACCCGTCAAATGGATTGACGAAGTCCTCCAAATTGCGCTGCAATACGCCCCGGAGCCCTTACCGGATGTGGCTCCCGAGATAGTCGCCAAGGATGAAAAAACGCGACGAGATATAAGGGGACTTAGAGTGAACAAGTCGGAACTGATTGACGCTATCGCCGCATCTGCTGATATCCCGAAAGCTGCTGCTGGCCGTGCGCTGGACGCAGTGATCGAATCCGTCACTGGCGCCCTGAAGGCTGGTGATTCTGTCGTTCTGGTGGGTTTCGGTACCTTCTCGGTAACTGATCGCCCTGCTCGTACCGGTCGCAACCCGCAAACCGGCAAGACTCTGGAAATCCCTGCTGCCAAGAAGCCTGGCTTCAAGGCAGGCAAGGCGCTGAAAGAAGCCGTCAACTAA

Transcript

HOLI00001.g49306.t1

Protein

Uniprot

Uniprot term	Description
P0A9M1	Lon protease OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=lon PE=3 SV=1
P0A9M0	Lon protease OS=Escherichia coli (strain K12) OX=83333 GN=lon PE=1 SV=1
Q32JJ5	Lon protease OS=Shigella dysenteriae serotype 1 (strain Sd197) OX=300267 GN=lon PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05362	Lon_C	Lon protease (S16) C-terminal proteolytic domain	Domain	Interproscan
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF00216	Bac_DNA_binding	Bacterial DNA-binding protein	Domain	Interproscan
PF02190	LON_substr_bdg	ATP-dependent protease La (LON) substrate-binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000119	Family	Histone-like DNA-binding protein	Interproscan
IPR008269	Domain	Peptidase S16, Lon proteolytic domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR020816	Conserved_site	Histone-like DNA-binding protein, conserved site	Interproscan
IPR003111	Domain	Lon protease, N-terminal domain	Interproscan
IPR010992	Homologous_superfamily	Integration host factor (IHF)-like DNA-binding domain superfamily	Interproscan
IPR027543	Family	Lon protease, bacterial	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR046336	Homologous_superfamily	Lon protease, N-terminal domain superfamily	Interproscan
IPR004815	Family	Lon protease, bacterial/eukaryotic-type	Interproscan
IPR015947	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR027065	Family	Lon protease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10046	ATP DEPENDENT LON PROTEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0030527	Molecular Function	structural constituent of chromatin	Interproscan
GO:0004176	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004252	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0030163	Biological Process	protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01338	lon; ATP-dependent Lon protease	EC:3.4.21.53	Peptidases and inhibitors	ko01002	deepkoala