Gene detail

Detailed information of HOLI00001.G50481 in Hydra oligactis

Genomic Location: HOLI00001:1858993...1861770
NR annotation: WP_225422511.1, NAD-dependent succinate-semialdehyde dehydrogenase [Pseudomonas huaxiensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00001.g50481.t1

ATGTCCGCACAACAAAAAACCCTTATCAGCGCCCGTGCCCAGCACGTCTCCAACGGGATCGCCATCGCACATCCCATCACCGTGGCGCGCGCTGCCGGTGCCTATATCTGGGACGATCAGGGCAAGAAGTACCTCGATTTCGTCGGTGGTATCGGTGTGCTCAACGTCGGCCATAACCATCCCCGGGTCGTCGAGGCAGTACGCAAGCAACTGGATACCTTTTCCCATATCTGCTTCCAGGTCGCGGCCTACGACCAGTACATCGATCTGGCCGCGCAACTGAACGGGTTGGTCGGCGGCGACCAGCACTACAAATCGGTGTTTCTGACCACCGGTGCCGAGGCCGTCGAGAACGCCATCAAGATTGCCCGCGCCCACACCAATCGGCCTGGCGTGATCGCCTTCCGTGGCGGCTTCCACGGTCGCACCCTGATGGGCATGAGCCTGACCGGGATGAGCCAGCCGTACCGGCAGAACTTCGGCCCACTGGCGCCGGACATCTACCACACGCCGTACCCCAACGAGTACCGCGGCGTGACCACGGAAATGGCCCTGGCCGCGCTGCAGGAGGTGTTCGACACCCAGATCGCCGCCGACCGTGTGGCTGCGATCATCATCGAGCCAGTACAGGGCGACGGCGGCTTCATCGCCGCGCCGGTGGAATTCATGCGCGCCCTGCGCAAGAAGACCGAAGAGCTGGGCATCGTGCTGATCTGCGATGAAATCCAGACCGGCTTTGGCCGTACCGGCAAGCTGTTCGGCTTCCAGCACTCGGGTATCCAGCCCGACCTGATCACCGTGGCCAAGAGCCTCGCCGGTGGCCTGCCGATTTCGGGCGTGGTCGGCCGTGCCGAGATGATGGACGCGCCGCTGCCAGGCGGCCTCGGTGGCACCTACGGCGGCAACCCGCCAGGCTGCGCCGCCGCGCTGGAAGTGATCCGTATCTTCGAGTCGGAAAACCTGGTCGAGCGCAGCCGCGCGATCGGCGAGCAACTGCTGGCGGGGTTCAAGACGCTGGAAGGCCGTTTCGACAGCATTGGCCATGTCCGCGCGATTGGCGCCATGGCTGCCGTCGAGTTCGTCGCCGACCGCCAGAGCAAGGAGCCGGACGCCGCACTGGCGCAACGTGTCATCGAGCGCGGCGCGGGCCGAAGGCTTGCTGGTGATCAAGTGCGGGGTGTACCGCAACGTGGTCCGGTTCATCTGCCCGCTGGTGATTTCCGAGCAGGATGTCGCCGAGGCCCTGGGCATGTTCGAGCGCGCCTTGACAGTCGCTACTGCTTGAAAGCCGCTACCGAGCCCAAGATGTTGATTGATGGAGTACGTTCAGTGAACACCCCTGCAGAAACCCCCAAGGCCTGGAAACTGGCCTCCCTGCCGGCAGGCAGCCGCGACAACAAGACTTATGCCGTCATCAACCCGGCGAGCCAGATCGCCTGCGCCAGCGTGCCGGACTGCAACGCCGCCGATGCGAAACAGGTGGCCGACGCCTCGGTCGTGGCCTTCGATGCCTGGAAGCAGACCACCGCGTTTCACCGCAGCCAGTTGCTGCGCAAATGGTTCGACCGCATCGTTTCCGGCGCCGAGGACATTGCCCGGGCGATCACCAGCGAAATGGGCAAGCCGTTCAAGGAAGCCGTCGGCGAAGTGATGTACGCCGCAGGCTTTGCCGAGTGGTACGCCGAAGAGGCCAAGCGCCTGTATGGCGAGACATTCGCCAGCCAGCACGAAAACAAGCGTCTGTACGCCACCCGCCAGCCGGTCGGGCCGGTGTACGCGGTAACGCCGTGGAATTTCCCCGCCGCGATGATCACCCGCAAGGTCGCCCCGGCCCTGGCTGCTGGCTGCACGGTGATCGTCAAGCCGGCCGAGCAGTCGCCGCTCACCGCGCTGCTGCTGGAGCAGTACTGGCGCGAGGTCGGCGGCCCGGAAGGCACCTTCCAGGTCATCACCTCCAGCGACCCGGCCGAGGTTTCCGGGGTGTTCTTCGATGACCGGCGCATCCGCAAGCTGACCTTCACCGGCAGCACCGAAATCGGCGTGCTGCTGTATCGCCAGTCCGCGCAGACCATGAAACGGGTATCGCTGGAGCTGGGTGGCCACGCGCCGTTCATTGTCTTCGCCGATGCCGATATCGAGCGCGCGGCCGAAGACATCATGGCCTGCAAGTTCCGCAATGCCGGGCAGACCTGCGTGTGCACCAACCGTATCTACGTGCACCGGTCGATCAGCGCGCGCTTGGTCGAGGCACTGGCCAGCCGTATCTCGGCGCTGCGCGTCGGTGATCCGCTCGATGCCGACACCCAGATCGGCCCGCTGGTGGACGAGCAGGGCCTGAACAAGGTCCGCGAGCACGTCGAGGATGCCGTGCGCCAGGGCGCCAGGGTGGTGGTCGGCGGGCAGCCGCTGGGCGGCTTGTACTTCCAGCCGACGCTGTTGTGCGACGTGGCGCCGGGCATGCGCATTCTCGAAGAGGAAACCTTCGGCCCGGTGGCACCGATTCTCGAATTCGACAGCGTCGACGAGGTGGTGGCAGCGGCGAACGATACGCCCTATGGCCTTGCGGCCTACCTGTGGACCCGCGACCTGGATACCGCCCACCGCGTGTCCGAGCGTCTCGACTACGGCATCGTCGGCATCAACGACGGTGCACCATCCACCCCGCAGGCGCCGTTCGGCGGCATGAAGATGAGCGGCCTGGGCCGCGAAGGCGGGGTGTGGGGGATTCAGGAGTACCTCGACACCAAGTTCGTCTCGGTCGGCCTGGCCCCGCGTTGA

Transcript

HOLI00001.g50481.t1

Protein

Uniprot

Uniprot term	Description
P94428	Succinate-semialdehyde dehydrogenase [NADP(+)] OS=Bacillus subtilis (strain 168) OX=224308 GN=gabD PE=1 SV=1
P25526	Succinate-semialdehyde dehydrogenase [NADP(+)] GabD OS=Escherichia coli (strain K12) OX=83333 GN=gabD PE=1 SV=1
P0DOV9	3-sulfolactaldehyde dehydrogenase OS=Pseudomonas putida OX=303 GN=PpSQ1_00395 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00171	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan
PF00202	Aminotran_3	Aminotransferase class-III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016162	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR015590	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR049704	Conserved_site	Aminotransferases class-III pyridoxal-phosphate attachment site	Interproscan
IPR005814	Family	Aminotransferase class-III	Interproscan
IPR016160	Conserved_site	Aldehyde dehydrogenase, cysteine active site	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR016161	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR016163	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR050740	Family	Aldehyde Dehydrogenase Superfamily	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43353	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0008483	Molecular Function	transaminase activity	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0016620	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0006807	Biological Process	obsolete nitrogen compound metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07250	gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase	EC:2.6.1.19 EC:2.6.1.22 EC:2.6.1.48	Amino acid related enzymes	ko01007	deepkoala