Gene detail

Detailed information of HOLI00001.G50845 in Hydra oligactis

Genomic Location: HOLI00001:2332600...2332851
NR annotation: WP_280091814.1, MULTISPECIES: cold shock domain-containing protein CspD [Pseudomonas]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
P0A970	Cold shock-like protein CspD OS=Escherichia coli O157:H7 OX=83334 GN=cspD PE=3 SV=1
P0A969	Cold shock-like protein CspD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=cspD PE=3 SV=1
P0A968	Cold shock-like protein CspD OS=Escherichia coli (strain K12) OX=83333 GN=cspD PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	CSD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050181	Family	Cold shock domain-containing protein	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR012156	Family	Cold shock, CspA	Interproscan
IPR012751	Family	CspD, cold shock	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03704	cspA; cold shock protein	-	Transcription	-	deepkoala