Detailed information of HOLI00001.G50881 in Hydra oligactis

Genomic Location: HOLI00001:2377655...2379397
NR annotation: WP_262127618.1, MULTISPECIES: autotransporter assembly complex family protein [unclassified Pseudomonas]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
D2TN56Translocation and assembly module subunit TamA OS=Citrobacter rodentium (strain ICC168) OX=637910 GN=tamA PE=1 SV=1
P0ADE5Translocation and assembly module subunit TamA OS=Escherichia coli O157:H7 OX=83334 GN=tamA PE=3 SV=1
P0ADE4Translocation and assembly module subunit TamA OS=Escherichia coli (strain K12) OX=83333 GN=tamA PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01103Omp85Omp85 superfamily domainDomainInterproscan
PF07244POTRASurface antigen variable number repeatDomainInterproscan
PF17243POTRA_TamA_1POTRA domain TamA domain 1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000184DomainBacterial surface antigen (D15)Interproscan
IPR010827DomainPOTRA domain, BamA/TamA-likeInterproscan
IPR035243DomainTamA, POTRA domain 1Interproscan
IPR039910FamilySurface antigen D15-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12815SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0019867Cellular Componentouter membraneInterproscan
GO:0009306Biological Processprotein secretionInterproscan
GO:0045203Cellular Componentobsolete integral component of cell outer membraneInterproscan
GO:0097347Cellular ComponentTAM protein secretion complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K07278tamA; translocation and assembly module TamA-Transportersko02000deepkoala

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